Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40332
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58762-4|AAK39303.1|  109|Caenorhabditis elegans Hypothetical pr...    61   7e-10
Z79600-6|CAB01879.2|  529|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z68004-2|CAA91982.1|  677|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z48245-1|CAA88290.1|  356|Caenorhabditis elegans Hypothetical pr...    28   8.0  
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical...    28   8.0  
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    28   8.0  

>U58762-4|AAK39303.1|  109|Caenorhabditis elegans Hypothetical
           protein T27F7.3b protein.
          Length = 109

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 25/43 (58%), Positives = 32/43 (74%)
 Frame = +1

Query: 328 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 456
           GT+VEHPEYGEV+QL GDQR+ +  +L K G+V     +VHGF
Sbjct: 67  GTIVEHPEYGEVIQLTGDQRDKVKDFLIKVGIVNESNCRVHGF 109



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
 Frame = +3

Query: 129 MSIQNLNTFDPFADAIKS--SEDDVQDGLVHVRIQQRNGRKTLT 254
           MSI NLN   P ADA +   +ED V+ G+ H+RIQQR GRKT+T
Sbjct: 1   MSIANLNR--P-ADAFEQLETEDGVRQGVCHIRIQQRTGRKTIT 41



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 13/24 (54%), Positives = 20/24 (83%)
 Frame = +2

Query: 254 SVQGLSSEYDLKKIVRACKKEFAC 325
           +VQG+ +EYDLK+IV+  KK+ +C
Sbjct: 42  TVQGIGTEYDLKRIVQYLKKKHSC 65


>Z79600-6|CAB01879.2|  529|Caenorhabditis elegans Hypothetical
           protein F59C6.8 protein.
          Length = 529

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 114 PTFNRMSIQNLNTFDPF-ADAIKSSEDDVQDGL 209
           PTFNR  I N   FDP+  +A K +   + DGL
Sbjct: 397 PTFNRSKISNPPFFDPYHLNATKRAIYKISDGL 429


>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
            F54F3.1 protein.
          Length = 1584

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 377  P*SCSTSPYSGCSTTVPCTRTPSCMPARSSSG 282
            P S +++P  GC  T  C+    C+  RSS+G
Sbjct: 938  PGSSASAPELGCDVTRDCSEFADCVYERSSTG 969


>Z68004-2|CAA91982.1|  677|Caenorhabditis elegans Hypothetical
           protein F47B10.2 protein.
          Length = 677

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 459 LETVHLELFRLH*AGFGEPLA--NILSLVALKLQHLA 355
           L+ + L L R H  G+GEPLA      L+AL++  LA
Sbjct: 199 LKKLQLNLIRSHATGYGEPLAPNRARMLLALRINILA 235


>Z48245-1|CAA88290.1|  356|Caenorhabditis elegans Hypothetical
           protein T27D1.3 protein.
          Length = 356

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 22/77 (28%), Positives = 36/77 (46%)
 Frame = -3

Query: 289 LQVIFRGKALHRVSVLRPFRCWIRTWTKPS*TSSSELLIASANGSNVLRFWMDIRLNVGS 110
           +QVIF  KA+  V++  P+   +         S+S  L+ +       R   D+ L   S
Sbjct: 273 IQVIFLSKAVLNVTIHPPYDFILLMNALAMTCSASNPLLYTLFSQKFRRRLRDV-LYCPS 331

Query: 109 LCFNETLRYYALNNITV 59
              NET  YY++NN ++
Sbjct: 332 DVENETKTYYSINNTSI 348


>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform b
            protein.
          Length = 1250

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 22/77 (28%), Positives = 38/77 (49%)
 Frame = +3

Query: 60   TVILLSA*YRSVSLKQRDPTFNRMSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNG 239
            ++IL+++ Y+  S +    TF+          +  ++ +  S DD   G+VH   Q RNG
Sbjct: 809  SIILIASSYKITSYRL-PTTFDFEYFSCEEPLEACSEVMGISSDDTT-GMVHFLTQARNG 866

Query: 240  RKTLTRCKAFPRNMT*R 290
              T+T  ++ P N T R
Sbjct: 867  --TITLWESDPENRTPR 881


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform a
            protein.
          Length = 2456

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 22/77 (28%), Positives = 38/77 (49%)
 Frame = +3

Query: 60   TVILLSA*YRSVSLKQRDPTFNRMSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNG 239
            ++IL+++ Y+  S +    TF+          +  ++ +  S DD   G+VH   Q RNG
Sbjct: 809  SIILIASSYKITSYRL-PTTFDFEYFSCEEPLEACSEVMGISSDDTT-GMVHFLTQARNG 866

Query: 240  RKTLTRCKAFPRNMT*R 290
              T+T  ++ P N T R
Sbjct: 867  --TITLWESDPENRTPR 881


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,496,278
Number of Sequences: 27780
Number of extensions: 346327
Number of successful extensions: 974
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)