Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40331
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    26   3.1  
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ...    26   4.1  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.1  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    25   5.5  
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch...    25   5.5  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   9.5  
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc...    25   9.5  
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    25   9.5  

>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 182 LDNPQSENAALTVTGQYAYVAPDGSTTLS 268
           LD P +++A + + GQYA    D  T L+
Sbjct: 439 LDEPDAKSAVIWILGQYAEEIEDSITLLN 467


>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 362

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 289 GFQPKTSLGQK*KPQKPVYINNTPSQHKLDNDFV 390
           G  P   +G++  P     + N P++HKL  DF+
Sbjct: 10  GLIPADGIGKEVVPAARRLMENLPAKHKLKFDFI 43


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 441 QKQFLNSRAIWTLSFICTF 497
           +K FLN     TLSFIC F
Sbjct: 246 EKMFLNPDCALTLSFICIF 264


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +2

Query: 164 RQEEGKLDNPQSENAALTVTGQYAYVAPDGSTTLS--LSQRDP 286
           R    K D PQ   A  TVT Q + +  DG+   +  LS+R P
Sbjct: 57  RHSSVKTDRPQFHRADSTVTEQSSEILFDGNAESAEPLSKRSP 99


>SPBC14C8.04 |||acetolactate synthase regulatory
           unit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 289

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 1   TNQDA*IRHSRLRAGSPLLRCSTTKSPRCSDP 96
           T+  + I +  L A SPL RC   + PR + P
Sbjct: 19  TSATSPITYKALHANSPLPRCRIIEPPRATVP 50


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 233 AYVAPDGSTTLSLSQRDPTASNPKPL 310
           A V+   +TT S++  DP  ++PKPL
Sbjct: 576 ASVSITTTTTPSITPADPVPTSPKPL 601


>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 425

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 227 QYAYVAPDGSTTLSLSQRDPTASNPKPLWARSKN 328
           Q  ++ PDG  TL+  Q D       P+   +KN
Sbjct: 247 QIEFIPPDGKFTLASFQTDFATQKSLPVVVEAKN 280


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 387 CRQLRDLDVIIYPCHVQ*QKQFLNSRAIWTLSFI 488
           C+QL++LD++     V   K+FLN +    +SF+
Sbjct: 48  CKQLKELDLV-----VSSNKEFLNEKTSDQISFL 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,346,723
Number of Sequences: 5004
Number of extensions: 48040
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)