Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40331
         (542 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0511 + 14907475-14907933,14907948-14908178,14908520-149088...    29   3.2  
06_03_0871 - 25562767-25563509,25563889-25565776                       28   4.2  
02_03_0176 + 16010806-16011095,16011983-16012061,16012389-160124...    27   7.3  
02_05_0975 + 33227431-33227730,33228556-33228636,33228883-332296...    27   9.7  

>05_03_0511 +
           14907475-14907933,14907948-14908178,14908520-14908855,
           14909571-14910126,14910217-14910424,14910519-14910885,
           14910988-14911110
          Length = 759

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 31  RLRAGSPLLRCSTTKSPRCSDPTF*QQRGTRXLQLCVR 144
           R R G PLLR ++T +P  S P+  Q  G+  +QL  R
Sbjct: 39  RPRRGPPLLRAASTAAPPSSSPSS-QSPGSLSIQLSPR 75


>06_03_0871 - 25562767-25563509,25563889-25565776
          Length = 876

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
 Frame = +2

Query: 17  KYVTVACVLVALCSGAPQQNPQDVQILRFDSNV--EPXGYSFAYETSDGTSRQEEGKLDN 190
           ++V V  VLV +C GA   N   V +L F   V  +P G    +  +D +     G + N
Sbjct: 4   RWVVVFWVLVVMCRGACGLNADGVLLLSFKYAVTADPLGALAGWGYADESPCAWNGVVCN 63

Query: 191 --PQSENAALTVTGQYAYVAPDGSTT 262
             PQ++ AA          A +G  +
Sbjct: 64  GFPQADAAAAWTANVTGVAAAEGGNS 89


>02_03_0176 +
           16010806-16011095,16011983-16012061,16012389-16012464,
           16012541-16012630,16012878-16013031,16013172-16013181,
           16013240-16013407,16014087-16014485,16014580-16014990
          Length = 558

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 24/84 (28%), Positives = 37/84 (44%)
 Frame = +2

Query: 83  DVQILRFDSNVEPXGYSFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAYVAPDGSTT 262
           D ++   D  +   GYS +  +SD T+   E  +++ +  N   T T       P   TT
Sbjct: 472 DSKVSEGDILLSNQGYSSSTSSSDETADSGEKNVEDDEEFN---TETSP----EPSMETT 524

Query: 263 LSLSQRDPTASNPKPLWARSKNPK 334
            S  Q DP+A   +    R +NPK
Sbjct: 525 DSHGQPDPSADGERFELRRRENPK 548


>02_05_0975 + 33227431-33227730,33228556-33228636,33228883-33229680,
            33230829-33231005,33231159-33231274,33231422-33231520,
            33231598-33232040,33232147-33232184,33232343-33232600,
            33233378-33233525,33233989-33234108,33234884-33234984,
            33235090-33235213,33235386-33235498,33236103-33236214,
            33236298-33236432,33236527-33236593,33236685-33236741,
            33236774-33236900,33237221-33237338,33237418-33237929
          Length = 1347

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 253  AVRSYVSILSSNCQSCILGLWVVQFTFLLS--GCTVTSFVRKAVAXGFH 113
            A  SY+  +   C+ C+L L +V   + L+   C++TS   + +A   H
Sbjct: 996  ACGSYLFTILQKCKECVLCLHIVTALYSLNVEQCSITSRTVQKMADALH 1044


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,037,689
Number of Sequences: 37544
Number of extensions: 315875
Number of successful extensions: 812
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)