Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40331
(542 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 28 3.8
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 28 3.8
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 28 3.8
AF304119-1|AAG50232.1| 326|Caenorhabditis elegans seven transme... 28 3.8
AF068718-6|AAC17769.2| 326|Caenorhabditis elegans Hypothetical ... 28 3.8
AC084152-7|AAK39310.1| 172|Caenorhabditis elegans Hypothetical ... 27 6.6
Z74033-6|CAF31474.1| 321|Caenorhabditis elegans Hypothetical pr... 27 8.7
AL110487-16|CAH10818.1| 304|Caenorhabditis elegans Hypothetical... 27 8.7
AL110487-15|CAH10817.1| 307|Caenorhabditis elegans Hypothetical... 27 8.7
AL110487-14|CAB54432.1| 395|Caenorhabditis elegans Hypothetical... 27 8.7
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +2
Query: 131 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY--VAPDG 253
+F E D ++ EEGK P + +G Y Y + PDG
Sbjct: 4340 NFVTENGDVITKDEEGKPLGPNGQILPTDASGNYIYPVIGPDG 4382
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 131 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY 238
SF E D EEGK P E A +G Y Y
Sbjct: 5048 SFVTENGDRIEFNEEGKPLGPDGEVLATDASGNYVY 5083
Score = 27.5 bits (58), Expect = 6.6
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +2
Query: 131 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAYVA--PDGSTTLSLSQRDPTASNPK 304
SF E ++ +EGK +P + +G Y Y A PDGS PT SN K
Sbjct: 11275 SFITENGKIVAKDDEGKPISPDGQVLPTDASGNYIYPALGPDGSIL-------PTDSNGK 11327
Query: 305 PLW 313
++
Sbjct: 11328 SIY 11330
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +2
Query: 131 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY--VAPDG 253
SF E + R E+GK P + +G Y Y V PDG
Sbjct: 4485 SFVTEGGEIVERDEDGKPLGPDGQVLPTDASGNYIYPVVGPDG 4527
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +2
Query: 131 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY--VAPDG 253
SF + + +EGK P + + +G Y Y V PDG
Sbjct: 7872 SFVTDDGQAIGKDDEGKPIGPDGQTLPIDDSGNYIYPVVGPDG 7914
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +2
Query: 131 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY--VAPDG 253
+F E D ++ EEGK P + +G Y Y + PDG
Sbjct: 4385 NFVTENGDVITKDEEGKPLGPNGQILPTDASGNYIYPVIGPDG 4427
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 131 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY 238
SF E D EEGK P E A +G Y Y
Sbjct: 5093 SFVTENGDRIEFNEEGKPLGPDGEVLATDASGNYVY 5128
Score = 27.5 bits (58), Expect = 6.6
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +2
Query: 131 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAYVA--PDGSTTLSLSQRDPTASNPK 304
SF E ++ +EGK +P + +G Y Y A PDGS PT SN K
Sbjct: 11320 SFITENGKIVAKDDEGKPISPDGQVLPTDASGNYIYPALGPDGSIL-------PTDSNGK 11372
Query: 305 PLW 313
++
Sbjct: 11373 SIY 11375
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +2
Query: 131 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY--VAPDG 253
SF E + R E+GK P + +G Y Y V PDG
Sbjct: 4530 SFVTEGGEIVERDEDGKPLGPDGQVLPTDASGNYIYPVVGPDG 4572
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +2
Query: 131 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY--VAPDG 253
SF + + +EGK P + + +G Y Y V PDG
Sbjct: 7917 SFVTDDGQAIGKDDEGKPIGPDGQTLPIDDSGNYIYPVVGPDG 7959
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +2
Query: 131 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY--VAPDG 253
+F E D ++ EEGK P + +G Y Y + PDG
Sbjct: 4385 NFVTENGDVITKDEEGKPLGPNGQILPTDASGNYIYPVIGPDG 4427
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 131 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY 238
SF E D EEGK P E A +G Y Y
Sbjct: 5093 SFVTENGDRIEFNEEGKPLGPDGEVLATDASGNYVY 5128
Score = 27.5 bits (58), Expect = 6.6
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +2
Query: 131 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAYVA--PDGSTTLSLSQRDPTASNPK 304
SF E ++ +EGK +P + +G Y Y A PDGS PT SN K
Sbjct: 11320 SFITENGKIVAKDDEGKPISPDGQVLPTDASGNYIYPALGPDGSIL-------PTDSNGK 11372
Query: 305 PLW 313
++
Sbjct: 11373 SIY 11375
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +2
Query: 131 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY--VAPDG 253
SF E + R E+GK P + +G Y Y V PDG
Sbjct: 4530 SFVTEGGEIVERDEDGKPLGPDGQVLPTDASGNYIYPVVGPDG 4572
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +2
Query: 131 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY--VAPDG 253
SF + + +EGK P + + +G Y Y V PDG
Sbjct: 7917 SFVTDDGQAIGKDDEGKPIGPDGQTLPIDDSGNYIYPVVGPDG 7959
>AF304119-1|AAG50232.1| 326|Caenorhabditis elegans seven
transmembrane protein protein.
Length = 326
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -2
Query: 250 VRSYVSILSSNCQSCILGLWVV--QFTFLLSGCTVT 149
V Y+ ++ N +C++ + + +FTF L+GC+ T
Sbjct: 106 VSEYLCVILENVIACVIAVLIYPPRFTFFLNGCSKT 141
>AF068718-6|AAC17769.2| 326|Caenorhabditis elegans Hypothetical
protein R01B10.5 protein.
Length = 326
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -2
Query: 250 VRSYVSILSSNCQSCILGLWVV--QFTFLLSGCTVT 149
V Y+ ++ N +C++ + + +FTF L+GC+ T
Sbjct: 106 VSEYLCVILENVIACVIAVLIYPPRFTFFLNGCSKT 141
>AC084152-7|AAK39310.1| 172|Caenorhabditis elegans Hypothetical
protein Y102A11A.7 protein.
Length = 172
Score = 27.5 bits (58), Expect = 6.6
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 23 VTVACVL-VALCSGAPQQNPQDVQILRFDSNVEPXGYSFAYETSDGTSRQEEGKLDNP 193
+TV C + + LC+ +N Q ++L+F S+ SFAY ++G G +P
Sbjct: 108 LTVICWMGIWLCNRRKDKN-QKKELLKFGSSSSVSNMSFAYPIANGHYHFGTGPFQSP 164
>Z74033-6|CAF31474.1| 321|Caenorhabditis elegans Hypothetical
protein F38B7.8 protein.
Length = 321
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 356 VLFMYTGFWGFYFWPKEVLGWKPLGPAVKVTV 261
+ + T F G +F PK +LG+ P+ P ++ T+
Sbjct: 61 IYILLTTFIGIFF-PKTILGYLPIPPFLESTI 91
>AL110487-16|CAH10818.1| 304|Caenorhabditis elegans Hypothetical
protein Y39E4B.3c protein.
Length = 304
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 179 KLDNPQSENAALTVTGQYAYVAPDGSTTLSLSQRDPT 289
+L QS T +PDGSTT+S S PT
Sbjct: 194 QLTAQQSTTTTTPTTTSTTTASPDGSTTISPSSTTPT 230
>AL110487-15|CAH10817.1| 307|Caenorhabditis elegans Hypothetical
protein Y39E4B.3b protein.
Length = 307
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 179 KLDNPQSENAALTVTGQYAYVAPDGSTTLSLSQRDPT 289
+L QS T +PDGSTT+S S PT
Sbjct: 194 QLTAQQSTTTTTPTTTSTTTASPDGSTTISPSSTTPT 230
>AL110487-14|CAB54432.1| 395|Caenorhabditis elegans Hypothetical
protein Y39E4B.3a protein.
Length = 395
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 179 KLDNPQSENAALTVTGQYAYVAPDGSTTLSLSQRDPT 289
+L QS T +PDGSTT+S S PT
Sbjct: 194 QLTAQQSTTTTTPTTTSTTTASPDGSTTISPSSTTPT 230
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,128,724
Number of Sequences: 27780
Number of extensions: 282455
Number of successful extensions: 764
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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