Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40331
         (542 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   3.5  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   3.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   3.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.1  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 48  PFAQVLHNKIPKMFRSYVLTATWNPXATA 134
           P+++    +I K   SY+    +NP A A
Sbjct: 88  PYSETRFEEIKKEVSSYIKKIGYNPAAVA 116


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 48  PFAQVLHNKIPKMFRSYVLTATWNPXATA 134
           P+++    +I K   SY+    +NP A A
Sbjct: 104 PYSETRFEEIKKEVSSYIKKIGYNPAAVA 132


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 48  PFAQVLHNKIPKMFRSYVLTATWNPXATA 134
           P+++    +I K   SY+    +NP A A
Sbjct: 161 PYSETRFEEIKKEVSSYIKKIGYNPAAVA 189


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +3

Query: 297  TQNLFGPEVKTPKTC 341
            T N+F PE   P  C
Sbjct: 1799 THNVFSPEYDDPANC 1813


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,689
Number of Sequences: 438
Number of extensions: 3221
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)