Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40330
         (824 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   7.9  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   7.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   7.9  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 810 NRRWFVGSSSSSKCGLHIAFVPELYAYAN 724
           N   F+G +  + C + +AFVP  +   N
Sbjct: 703 NESKFIGFTMYTTCIIWLAFVPIYFGTGN 731


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
 Frame = -2

Query: 763 TYSVRARAIRIRQPPE-KSFVAFCCISLVKPRPCRILA 653
           T S     I  R P   K F  F    L  PRPC +LA
Sbjct: 163 TSSQNIAVIEYRIPKSGKGFSLFARF-LKNPRPCNVLA 199


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 810 NRRWFVGSSSSSKCGLHIAFVPELYAYAN 724
           N   F+G +  + C + +AFVP  +   N
Sbjct: 793 NESKFIGFTMYTTCIIWLAFVPIYFGTGN 821


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,187
Number of Sequences: 438
Number of extensions: 4583
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)