Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40328
(790 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces... 99 4e-22
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 67 3e-12
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 58 1e-09
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 36 0.009
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 31 0.19
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch... 30 0.43
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 29 0.57
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 28 1.8
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 2.3
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 27 2.3
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 27 3.1
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.1
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 27 4.0
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f... 27 4.0
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 27 4.0
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 26 7.1
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 7.1
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p... 26 7.1
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 25 9.4
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 25 9.4
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 25 9.4
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 25 9.4
>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 276
Score = 99 bits (238), Expect = 4e-22
Identities = 65/170 (38%), Positives = 96/170 (56%), Gaps = 5/170 (2%)
Frame = +1
Query: 256 AQLIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAM 435
A + G A SGKST+C ++ + R +VNLDPAAE+F++EP VDIR+LI +DD M
Sbjct: 5 AAFVCGVASSGKSTFCGALMSYMKSVGRSCHLVNLDPAAENFEWEPTVDIRDLISIDDVM 64
Query: 436 EDEELQFGPNGGLVFCIETLLENSAG*RSNLEML--MMITFYLTVQDRLSYTPICRL*ED 609
EEL +GPNGGL++C E L+EN + + F + Q L YT + L
Sbjct: 65 --EELDYGPNGGLIYCFEFLMENLDWLNEEIGDYDEDYLIFDMPGQIEL-YTHVPIL--P 119
Query: 610 WLICFRIGTLGYV*CS*W---TRVHD*WCKFLSGTMAALSVMVNLELPHV 750
LI TL + C+ + ++ KF +G ++A+S MV +E+PH+
Sbjct: 120 ALIRHLQVTLNFRPCAVYLLESQFLVDRTKFFAGVLSAMSAMVMMEVPHI 169
Score = 73.3 bits (172), Expect = 4e-14
Identities = 30/55 (54%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
Frame = +3
Query: 510 WLEEQLGDVDDDYILFDCPGQIELYTHLPVMRRLVDLLQ-NWNFRICVVFLVDSR 671
WL E++GD D+DY++FD PGQIELYTH+P++ L+ LQ NFR C V+L++S+
Sbjct: 88 WLNEEIGDYDEDYLIFDMPGQIELYTHVPILPALIRHLQVTLNFRPCAVYLLESQ 142
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 66.9 bits (156), Expect = 3e-12
Identities = 32/81 (39%), Positives = 50/81 (61%)
Frame = +1
Query: 253 FAQLIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDA 432
F Q++VGP GSGKSTYC + + R +VNLDPA + Y +DIR+++ ++
Sbjct: 3 FCQVVVGPPGSGKSTYCFGMYQLLSAIGRSSIIVNLDPANDFIKYPCAIDIRKVLDVEMI 62
Query: 433 MEDEELQFGPNGGLVFCIETL 495
+D +L GPNG L++ +E +
Sbjct: 63 QKDYDL--GPNGALIYAMEAI 81
Score = 45.2 bits (102), Expect = 1e-05
Identities = 20/54 (37%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Frame = +3
Query: 510 WLEEQLGDVDDDYILFDCPGQIELYTHLPVMRRLVDLLQ-NWNFRICVVFLVDS 668
WL ++L D Y++FDCPGQ+EL+T+ +++++ L+ ++R V LVD+
Sbjct: 87 WLLKELKKHRDSYVIFDCPGQVELFTNHNSLQKIIKTLEKELDYRPVSVQLVDA 140
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 58.4 bits (135), Expect = 1e-09
Identities = 28/74 (37%), Positives = 44/74 (59%)
Frame = +1
Query: 256 AQLIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAM 435
A ++VG AGSGK+T+ + H + ++NLDPA + YE +DIR+ I+ + M
Sbjct: 10 AIIVVGMAGSGKTTFMQQLNAHLHSKNKPPYILNLDPAVRNLPYEANIDIRDTINYKEVM 69
Query: 436 EDEELQFGPNGGLV 477
+ L GPNGG++
Sbjct: 70 KQYNL--GPNGGIM 81
Score = 29.5 bits (63), Expect = 0.57
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 543 DYILFDCPGQIELYTHLPVMRRLVDLLQNWNFRICVVFLVDS 668
D+IL D PGQIE++ + D L + ++ C+ ++VD+
Sbjct: 106 DHILIDTPGQIEIFQWSASGSIICDTLAS-SWPTCIAYVVDT 146
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 35.5 bits (78), Expect = 0.009
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +1
Query: 253 FAQLIVGPAGSGKSTYCSTIVK-HAMDSKRIVD 348
F ++VGP+GSGKST +T+ H MDSK +D
Sbjct: 33 FNVMVVGPSGSGKSTLINTLFSAHLMDSKGRLD 65
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 31.1 bits (67), Expect = 0.19
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 214 NNSCFRSKQKNNAFAQLIV-GPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDP 366
N F + + + +L+V GP GSGKS++ I + R + ++LDP
Sbjct: 318 NQLLFSTSKSDYVVPRLMVCGPKGSGKSSFSRYITNRLLQQYRHIAYLDLDP 369
>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 29.9 bits (64), Expect = 0.43
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 582 YTHLPVMRRLVDLLQNWNFRICVV 653
Y HL V +R+ D+LQ W C V
Sbjct: 187 YAHLTVSKRMKDVLQTWGMNPCYV 210
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 29.5 bits (63), Expect = 0.57
Identities = 10/19 (52%), Positives = 17/19 (89%)
Frame = +1
Query: 265 IVGPAGSGKSTYCSTIVKH 321
I+GP+GSGKST+ S ++++
Sbjct: 467 IIGPSGSGKSTFISLLLRY 485
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 250 AFAQLIVGPAGSGKSTYCSTIVKHAMDS 333
AF ++ G +G GK+T+C+T+ + S
Sbjct: 28 AFTLMLCGESGLGKTTFCNTLFSTTIKS 55
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 27.5 bits (58), Expect = 2.3
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +1
Query: 262 LIVGPAGSGKSTYCSTIV-KHAMDSKRIVDVVNLDPAAEHFDYEPLVDI-REL-IHLDDA 432
+IVGP GSGKS I+ + A + VV L+ + D L +I R+L I L+
Sbjct: 579 IIVGPRGSGKSVLVDDILSRAAQEINEKSYVVRLNGTYQTDDKLALREISRQLSIELESI 638
Query: 433 MEDEELQ 453
DE L+
Sbjct: 639 ESDEALK 645
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 265 IVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLD 363
IVG GSGKST T+++ M V+V +D
Sbjct: 1212 IVGRTGSGKSTMGLTLLRFTMIMSGAVEVDGID 1244
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 253 FAQLIVGPAGSGKSTYCSTI 312
+ LI+GP G+GKST S I
Sbjct: 34 YLNLIIGPNGTGKSTIVSAI 53
>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 96
Score = 27.1 bits (57), Expect = 3.1
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Frame = -2
Query: 351 YIYNAFGIHCMFHYCRAVC*LSTSGWSHY*LSE------RIVFLFRSKT*VVNTVYIFLL 190
+I+N I C FH A+C + S +I +F + NTV + L
Sbjct: 2 FIFNVLTIRCTFHVLFAICYFCDHLLQYISNSRDSKAGLKIFLVFELAVTIFNTVMLQLA 61
Query: 189 ERIGYFCIAACFLIASLSFLNFELQDVFCK 100
R+ A +++ + F+ + V CK
Sbjct: 62 NRVKNGLTLAILIVSVVMFVYHQQLIVNCK 91
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +1
Query: 265 IVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLD 363
I GP+GSGK++ IVK A++ +V +++LD
Sbjct: 26 IAGPSGSGKTSVAQLIVK-ALNLPHVV-ILSLD 56
>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
factor complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 265 IVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDP 366
++GP GK++ + +A+ R VNLDP
Sbjct: 111 LIGPRSCGKTSVLKILESYALKQSRHPICVNLDP 144
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -1
Query: 739 VPDSPLHLMQPLYLIKICTINHERES-TKNTTHILKFQF*SKSTNLLITG 593
VP + QPL + I + S T N ++ FQ+ + + LLITG
Sbjct: 902 VPTGSYEVSQPLANVTILGLTESPSSITLNGQNVSSFQYSNDTEELLITG 951
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 313 VKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAMEDEELQ 453
+ + ++ K I + +L PA +PL+ +++ +A EDE+LQ
Sbjct: 63 IANVLEPKLIDNQYSLIPALPSARTDPLLSQLNSLNIQNATEDEKLQ 109
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 262 LIVGPAGSGKSTYCSTIVKH 321
++VG GSGK+T CS + H
Sbjct: 105 MMVGLQGSGKTTTCSKLALH 124
>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 265 IVGPAGSGKSTYCSTIVK--HAMDSKRIVDVVNLDPAAEHFDYEPL 396
+ G GSGKST C+ + K + IV ++ +D H+ E L
Sbjct: 34 LAGGPGSGKSTLCAILAKAWNERFGSEIVKIIPMD--GFHYSLEEL 77
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 265 IVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFD 384
++G GSGKST+ ++ ++ +D L+ AE D
Sbjct: 106 LLGDNGSGKSTFLESVAARDVEYPEHIDSYLLNAEAEPSD 145
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 253 FAQLIVGPAGSGKSTYCSTIV 315
F L++G +GSGKST +T++
Sbjct: 96 FNVLVLGESGSGKSTLVNTLL 116
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 262 LIVGPAGSGKSTYCSTI 312
+++GPAGSGK+T +
Sbjct: 18 VVIGPAGSGKTTMAKAV 34
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 286 GKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIR 408
G +C + +SK ++ + NL A DY PL DIR
Sbjct: 359 GTLPFCRRYLDRIGESKYLLALNNLVSAGIVQDYPPLCDIR 399
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,226,492
Number of Sequences: 5004
Number of extensions: 66652
Number of successful extensions: 229
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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