Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40328
(790 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL033514-15|CAA22102.1| 272|Caenorhabditis elegans Hypothetical... 115 4e-26
U97196-2|AAB52461.2| 268|Caenorhabditis elegans Hypothetical pr... 71 1e-12
U10402-10|AAA19064.1| 355|Caenorhabditis elegans Gro-1 operon g... 53 2e-07
AY052770-1|AAL14109.1| 355|Caenorhabditis elegans GOP-2 protein. 53 2e-07
Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z70268-5|CAJ85767.2| 1204|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z70268-4|CAA94220.3| 1263|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z70268-3|CAA94219.3| 1263|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z82077-8|CAB63329.1| 459|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr... 29 3.8
U80450-4|AAB37829.1| 926|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81520-1|CAB04223.1| 399|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z82059-12|CAB04880.1| 622|Caenorhabditis elegans Hypothetical p... 28 6.6
U23177-4|AAM22055.1| 374|Caenorhabditis elegans Hypothetical pr... 28 6.6
U20783-1|AAC46845.1| 535|Caenorhabditis elegans unknown protein. 28 6.6
AL032665-2|CAA21772.1| 622|Caenorhabditis elegans Hypothetical ... 28 6.6
>AL033514-15|CAA22102.1| 272|Caenorhabditis elegans Hypothetical
protein Y75B8A.14 protein.
Length = 272
Score = 115 bits (276), Expect = 4e-26
Identities = 67/169 (39%), Positives = 95/169 (56%), Gaps = 3/169 (1%)
Frame = +1
Query: 253 FAQLIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDA 432
+AQL++GPAGSGKSTYCS + H + + R + +VNLDPA E F+Y +VD+R+LI ++D
Sbjct: 3 YAQLVMGPAGSGKSTYCSVMYNHCLSTGRTLRMVNLDPACEVFNYPAVVDVRDLISVNDV 62
Query: 433 MEDEELQFGPNGGLVFCIETLLENSAG*RSNLEMLMMITFYLTVQDRL---SYTPICRL* 603
EDEEL GPNG LVFC+E L++N L+ F + ++ S+ P+ R
Sbjct: 63 QEDEELILGPNGALVFCMEYLVQNLEWLHDELDEGEDDYFVIDCPGQIELYSHLPVMRQI 122
Query: 604 EDWLICFRIGTLGYV*CS*WTRVHD*WCKFLSGTMAALSVMVNLELPHV 750
D L + T KF+SG + ALS MV +E P +
Sbjct: 123 VDALKSWDFNVCSVFLID--TNFVLDAEKFISGALTALSAMVAIETPAI 169
Score = 86.2 bits (204), Expect = 2e-17
Identities = 34/63 (53%), Positives = 49/63 (77%)
Frame = +3
Query: 510 WLEEQLGDVDDDYILFDCPGQIELYTHLPVMRRLVDLLQNWNFRICVVFLVDSRS*LMVQ 689
WL ++L + +DDY + DCPGQIELY+HLPVMR++VD L++W+F +C VFL+D+ L +
Sbjct: 89 WLHDELDEGEDDYFVIDCPGQIELYSHLPVMRQIVDALKSWDFNVCSVFLIDTNFVLDAE 148
Query: 690 IFI 698
FI
Sbjct: 149 KFI 151
>U97196-2|AAB52461.2| 268|Caenorhabditis elegans Hypothetical
protein B0207.6 protein.
Length = 268
Score = 70.5 bits (165), Expect = 1e-12
Identities = 35/84 (41%), Positives = 51/84 (60%)
Frame = +1
Query: 253 FAQLIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDA 432
+ L++G G+GKST+C+ + +KR +NLDPA + Y P V+I E+I ++D
Sbjct: 2 YGVLVIGAPGAGKSTFCAGLTDIFSQTKRPFLTINLDPANDTMAYAPDVNITEMITVNDV 61
Query: 433 MEDEELQFGPNGGLVFCIETLLEN 504
M + L GPNG L +CIETL N
Sbjct: 62 M--DRLGLGPNGALKYCIETLGAN 83
Score = 42.3 bits (95), Expect = 4e-04
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +3
Query: 510 WLEEQLGDVDDDYILFDCPGQIELYTHLPVMRRLVDLLQNWNFRICVVFLVDS 668
WL +++ Y++ DCPGQ+ELY + +++ L+ R+C + L DS
Sbjct: 86 WLLQKIEANHKKYLIIDCPGQLELYKSEGELWKVIRFLEKSGVRLCALHLADS 138
>U10402-10|AAA19064.1| 355|Caenorhabditis elegans Gro-1 operon gene
protein 2 protein.
Length = 355
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/78 (34%), Positives = 41/78 (52%)
Frame = +1
Query: 262 LIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAMED 441
L++G AGSGK+T+ + K V+NLDPA Y VDIR+ + + M
Sbjct: 34 LVLGMAGSGKTTFVQRLTAFLHARKTPPYVINLDPAVSKVPYPVNVDIRDTVKYKEVM-- 91
Query: 442 EELQFGPNGGLVFCIETL 495
+E GPNG ++ C+ +
Sbjct: 92 KEFGMGPNGAIMTCLNLM 109
>AY052770-1|AAL14109.1| 355|Caenorhabditis elegans GOP-2 protein.
Length = 355
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/78 (34%), Positives = 41/78 (52%)
Frame = +1
Query: 262 LIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAMED 441
L++G AGSGK+T+ + K V+NLDPA Y VDIR+ + + M
Sbjct: 34 LVLGMAGSGKTTFVQRLTAFLHARKTPPYVINLDPAVSKVPYPVNVDIRDTVKYKEVM-- 91
Query: 442 EELQFGPNGGLVFCIETL 495
+E GPNG ++ C+ +
Sbjct: 92 KEFGMGPNGAIMTCLNLM 109
>Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical protein
C05A9.1 protein.
Length = 1283
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +1
Query: 265 IVGPAGSGKSTYCSTIVK--HAMDSKRIVDVVNL 360
+VGP+GSGKST S + + HA+D + +D N+
Sbjct: 1069 LVGPSGSGKSTIISLLERFYHAVDGEVKIDEENV 1102
>Z70268-5|CAJ85767.2| 1204|Caenorhabditis elegans Hypothetical protein
T21E8.1b protein.
Length = 1204
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +1
Query: 265 IVGPAGSGKSTYCSTIVK--HAMDSKRIVDVVNLD 363
+VGP+G GKST S + + HA+D + +D N++
Sbjct: 990 LVGPSGCGKSTIISLLERFYHAVDGEVKIDSENVE 1024
>Z70268-4|CAA94220.3| 1263|Caenorhabditis elegans Hypothetical protein
T21E8.1a protein.
Length = 1263
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +1
Query: 265 IVGPAGSGKSTYCSTIVK--HAMDSKRIVDVVNLD 363
+VGP+G GKST S + + HA+D + +D N++
Sbjct: 1049 LVGPSGCGKSTIISLLERFYHAVDGEVKIDSENVE 1083
>Z70268-3|CAA94219.3| 1263|Caenorhabditis elegans Hypothetical protein
T21E8.2 protein.
Length = 1263
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +1
Query: 265 IVGPAGSGKSTYCSTIVK--HAMDSKRIVDVVNLD 363
+VGP+G GKST S + + HA+D + +D N++
Sbjct: 1049 LVGPSGCGKSTIISLLERFYHAVDGEVKIDSENVE 1083
>Z82077-8|CAB63329.1| 459|Caenorhabditis elegans Hypothetical
protein W09C5.2 protein.
Length = 459
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 217 NSCFRSKQKNNA-FAQLIVGPAGSGKSTYCSTI 312
N FR KN F ++VG +G GKST+ +T+
Sbjct: 35 NQVFRRAVKNGFDFTLMVVGRSGLGKSTFINTL 67
>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
F18C12.1 protein.
Length = 4171
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 235 KQKNNAFAQLIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAA 372
+Q ++VG AGSGKST + + + +K+ + V +P A
Sbjct: 1909 EQMRQRIGVVVVGAAGSGKSTIWKILQRSLILTKKPLKVTQFNPKA 1954
>U80450-4|AAB37829.1| 926|Caenorhabditis elegans Hypothetical
protein M01E11.3 protein.
Length = 926
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 151 KKTGSYAKITYSF*QKNINRVNNSCFRSKQKNNAFAQLIVGP 276
KK S +I F ++ + N S S+ K N FAQ I GP
Sbjct: 480 KKIDSVMEIPLCFVKETTRQANRSNEESRHKLNTFAQTIHGP 521
>Z81520-1|CAB04223.1| 399|Caenorhabditis elegans Hypothetical
protein F31B9.1 protein.
Length = 399
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = -2
Query: 180 GYFCIAACFLIASLSFLNFELQDVFCKLYYCY 85
G +C+AACF AS FL + VF KLY+C+
Sbjct: 182 GVWCVAACF--ASPYFLYQGI--VFHKLYFCF 209
>Z82059-12|CAB04880.1| 622|Caenorhabditis elegans Hypothetical
protein T27E9.7 protein.
Length = 622
Score = 28.3 bits (60), Expect = 6.6
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Frame = +1
Query: 265 IVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLD---PAAEHFDYEPLVDI----RELIHL 423
++G GSGKST I M VD+ + PA+E + +VD+ +EL HL
Sbjct: 112 LIGLNGSGKSTIIQAIYNKEMPIPESVDMYLVSREMPASEKTALQAVVDVDSVRKELEHL 171
Query: 424 DD---AMEDEELQ 453
+ + DEE Q
Sbjct: 172 AEQLASQTDEESQ 184
>U23177-4|AAM22055.1| 374|Caenorhabditis elegans Hypothetical
protein C56G2.7 protein.
Length = 374
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 489 DPLREFCWLEEQLGDVDDDYILF 557
D L FCW + + G V DD I+F
Sbjct: 55 DMLIHFCWKDRETGAVVDDLIIF 77
>U20783-1|AAC46845.1| 535|Caenorhabditis elegans unknown protein.
Length = 535
Score = 28.3 bits (60), Expect = 6.6
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Frame = +1
Query: 265 IVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLD---PAAEHFDYEPLVDI----RELIHL 423
++G GSGKST I M VD+ + PA+E + +VD+ +EL HL
Sbjct: 111 LIGLNGSGKSTIIQAIYNKEMPIPESVDMYLVSREMPASEKTALQAVVDVDSVRKELEHL 170
Query: 424 DD---AMEDEELQ 453
+ + DEE Q
Sbjct: 171 AEQLASQTDEESQ 183
>AL032665-2|CAA21772.1| 622|Caenorhabditis elegans Hypothetical
protein T27E9.7 protein.
Length = 622
Score = 28.3 bits (60), Expect = 6.6
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Frame = +1
Query: 265 IVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLD---PAAEHFDYEPLVDI----RELIHL 423
++G GSGKST I M VD+ + PA+E + +VD+ +EL HL
Sbjct: 112 LIGLNGSGKSTIIQAIYNKEMPIPESVDMYLVSREMPASEKTALQAVVDVDSVRKELEHL 171
Query: 424 DD---AMEDEELQ 453
+ + DEE Q
Sbjct: 172 AEQLASQTDEESQ 184
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,785,725
Number of Sequences: 27780
Number of extensions: 372403
Number of successful extensions: 983
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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