Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40328
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    25   1.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.4  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.7  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.7  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.7  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.7  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.7  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.7  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              22   7.5  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              22   7.5  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    21   9.9  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 378 VFSCWIQVYYI 346
           V SCW+ VYYI
Sbjct: 68  VMSCWMNVYYI 78


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 249 IVFLFRSKT*VVNTVYIFLLERIGYFCIAACFLIASLSF 133
           ++FLF   T   NT+ I  + R  Y   A  + + SL+F
Sbjct: 51  LLFLFSVATVFGNTLVILAVVRERYLHTATNYFVTSLAF 89


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 252 VRSVNSGTSRKWKVNILLYNS 314
           VR +     R WK ++L+YNS
Sbjct: 95  VRDLRIPPHRLWKPDVLMYNS 115



 Score = 21.8 bits (44), Expect = 7.5
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -2

Query: 216 VNTVYIFLLER--IGYF--CIAACFLIASLSFLNFEL 118
           ++  ++ ++ R  + YF   I  C LIAS++ L F L
Sbjct: 219 IDITFVVIIRRRTLYYFFNLIVPCVLIASMAVLGFTL 255


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 378 VFSCWIQVYYI 346
           V SCW  +YYI
Sbjct: 106 VLSCWTNIYYI 116


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 378 VFSCWIQVYYI 346
           V SCW  +YYI
Sbjct: 159 VLSCWTNIYYI 169


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 252 VRSVNSGTSRKWKVNILLYNS 314
           V+ +    ++ WK +IL+YNS
Sbjct: 58  VKDLRITPNKLWKPDILMYNS 78


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 252 VRSVNSGTSRKWKVNILLYNS 314
           V+ +    ++ WK +IL+YNS
Sbjct: 58  VKDLRITPNKLWKPDILMYNS 78


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 252 VRSVNSGTSRKWKVNILLYNS 314
           V+ +    ++ WK +IL+YNS
Sbjct: 58  VKDLRITPNKLWKPDILMYNS 78


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 252 VRSVNSGTSRKWKVNILLYNS 314
           V+ +    ++ WK +IL+YNS
Sbjct: 58  VKDLRITPNKLWKPDILMYNS 78


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 252 VRSVNSGTSRKWKVNILLYNS 314
           V+ +    ++ WK +IL+YNS
Sbjct: 58  VKDLRITPNKLWKPDILMYNS 78


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 252 VRSVNSGTSRKWKVNILLYNS 314
           V+ +    ++ WK +IL+YNS
Sbjct: 58  VKDLRITPNKLWKPDILMYNS 78


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 252 VRSVNSGTSRKWKVNILLYNS 314
           V+ +    ++ WK +IL+YNS
Sbjct: 126 VKDLRITPNKLWKPDILMYNS 146


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 252 VRSVNSGTSRKWKVNILLYNS 314
           V+ +    ++ WK +IL+YNS
Sbjct: 126 VKDLRITPNKLWKPDILMYNS 146


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 690 IFIRYNGCIKCNGESGT 740
           I+IR+N  +KC G+  T
Sbjct: 112 IYIRFNKLVKCFGKYKT 128


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 690 IFIRYNGCIKCNGESGT 740
           I+IR+N  +KC G+  T
Sbjct: 112 IYIRFNKLVKCFGKYKT 128


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 231 SKT*VVNTVYIFLLERIGYFCIAA 160
           SK   V+ +  FL+E  GYF I A
Sbjct: 57  SKFFPVSEILSFLIEESGYFHIQA 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,102
Number of Sequences: 438
Number of extensions: 4703
Number of successful extensions: 19
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)