Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40327
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac...   109   2e-25
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc...   109   2e-25
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|...    45   5e-06
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    27   1.0  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    27   1.0  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   3.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   5.6  
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    25   5.6  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    24   9.7  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    24   9.7  

>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score =  109 bits (262), Expect = 2e-25
 Identities = 47/68 (69%), Positives = 60/68 (88%)
 Frame = +3

Query: 51  GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 230
           G K+R++LGLPV A++NCADN+GAKNLY+++V G   RLNRLPAA  GDM++ATVKKGKP
Sbjct: 10  GTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKP 69

Query: 231 ELRKKVMP 254
           +LRKK+MP
Sbjct: 70  DLRKKIMP 77



 Score =  104 bits (249), Expect = 7e-24
 Identities = 45/53 (84%), Positives = 51/53 (96%)
 Frame = +2

Query: 254 AVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 412
           A+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAKECADLWPR
Sbjct: 78  AIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130


>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  109 bits (262), Expect = 2e-25
 Identities = 47/68 (69%), Positives = 60/68 (88%)
 Frame = +3

Query: 51  GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 230
           G K+R++LGLPV A++NCADN+GAKNLY+++V G   RLNRLPAA  GDM++ATVKKGKP
Sbjct: 10  GTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKP 69

Query: 231 ELRKKVMP 254
           +LRKK+MP
Sbjct: 70  DLRKKIMP 77



 Score =  104 bits (249), Expect = 7e-24
 Identities = 45/53 (84%), Positives = 51/53 (96%)
 Frame = +2

Query: 254 AVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 412
           A+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAKECADLWPR
Sbjct: 78  AIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130


>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 126

 Score = 45.2 bits (102), Expect = 5e-06
 Identities = 20/46 (43%), Positives = 30/46 (65%)
 Frame = +2

Query: 254 AVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 391
           A+++R + P RR DG ++ F+DNA V+VN + E  G+ I   VA E
Sbjct: 64  AIIVRTKSPVRRPDGRYVRFDDNACVLVNKECEPLGTRILSVVANE 109


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -3

Query: 405  HRSAHSLATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTAAL 247
            + + H    GP++   ++  L     P  +S Y+N  +  L+GF+ ++  A L
Sbjct: 963  YNATHFEHIGPMLEATWMPILAALSNPLQNSDYVNELNMCLDGFQLVVRIACL 1015


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = -3

Query: 411 RGHRSAHSLATGPVMAEPFISPLLL-TMTPALSSKYINTPSRLLNGF---RCLMTTAALP 244
           R H+ AH+       AEP ++P++   + P+++    +TPS L   F     L+  AALP
Sbjct: 60  RRHKDAHAYDMSLTDAEPALAPVMSPAIPPSMNYPTPSTPSVLPESFSNDTNLLDPAALP 119


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 363 EPFISPLLLTMTPALSSKYINTPS 292
           +P+  P+L +  P L   Y++ PS
Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 98  DYCSHWETQGDTEFPPAEPPRP 33
           ++  H ET+ + E PP +P RP
Sbjct: 745 EHRKHRETEEEDEGPPPQPARP 766


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 80  ETQGDTEFPPAEPPRPL 30
           ET+  T FPPA+PP  L
Sbjct: 255 ETKEYTPFPPAQPPSKL 271


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 293 DGVFIYFEDNAGVIVNNKGEMKGSAI 370
           DG  +  E N  ++VN   +M+G+A+
Sbjct: 216 DGALLLNERNVEILVNKLTQMRGAAL 241


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 139 ITYRFFAPVLSAQLITAPTGRPREIR 62
           + Y F  P+LS QL T P  +P  IR
Sbjct: 80  VAYSFSDPILSTQLRTPPP-QPTSIR 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,683
Number of Sequences: 5004
Number of extensions: 42714
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)