Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40327
(458 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23 p... 130 3e-30
X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein pr... 129 4e-30
X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17 pro... 129 4e-30
BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein. 129 4e-30
BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23 p... 129 4e-30
BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23 p... 129 4e-30
BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal pr... 129 4e-30
AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23 p... 129 4e-30
BC034378-1|AAH34378.1| 77|Homo sapiens RPL23 protein protein. 126 5e-29
AY172136-1|AAO31738.1| 1906|Homo sapiens retinoic acid induced 1... 29 5.8
AL834486-1|CAD39144.1| 568|Homo sapiens hypothetical protein pr... 29 5.8
AL834468-1|CAD39127.1| 1285|Homo sapiens hypothetical protein pr... 29 5.8
AK131400-1|BAD18547.1| 852|Homo sapiens protein ( Homo sapiens ... 29 5.8
AK128850-1|BAC87646.1| 673|Homo sapiens protein ( Homo sapiens ... 29 5.8
AJ313524-1|CAC86408.1| 852|Homo sapiens putative binding protei... 29 5.8
AB058723-1|BAB47449.1| 1644|Homo sapiens KIAA1820 protein protein. 29 5.8
>BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 130 bits (313), Expect = 3e-30
Identities = 60/68 (88%), Positives = 65/68 (95%)
Frame = +3
Query: 51 GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 230
G KFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKP
Sbjct: 11 GAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP 70
Query: 231 ELRKKVMP 254
ELRKKV P
Sbjct: 71 ELRKKVRP 78
Score = 111 bits (266), Expect = 1e-24
Identities = 50/58 (86%), Positives = 54/58 (93%)
Frame = +2
Query: 239 EKGNAAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 412
+K AVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 74 KKVRPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein
protein.
Length = 140
Score = 129 bits (312), Expect = 4e-30
Identities = 60/68 (88%), Positives = 65/68 (95%)
Frame = +3
Query: 51 GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 230
G KFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKP
Sbjct: 11 GAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP 70
Query: 231 ELRKKVMP 254
ELRKKV P
Sbjct: 71 ELRKKVHP 78
Score = 111 bits (267), Expect = 1e-24
Identities = 50/58 (86%), Positives = 55/58 (94%)
Frame = +2
Query: 239 EKGNAAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 412
+K + AVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 74 KKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17
protein.
Length = 140
Score = 129 bits (312), Expect = 4e-30
Identities = 60/68 (88%), Positives = 65/68 (95%)
Frame = +3
Query: 51 GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 230
G KFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKP
Sbjct: 11 GAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP 70
Query: 231 ELRKKVMP 254
ELRKKV P
Sbjct: 71 ELRKKVHP 78
Score = 111 bits (267), Expect = 1e-24
Identities = 50/58 (86%), Positives = 55/58 (94%)
Frame = +2
Query: 239 EKGNAAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 412
+K + AVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 74 KKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein.
Length = 140
Score = 129 bits (312), Expect = 4e-30
Identities = 60/68 (88%), Positives = 65/68 (95%)
Frame = +3
Query: 51 GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 230
G KFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKP
Sbjct: 11 GAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP 70
Query: 231 ELRKKVMP 254
ELRKKV P
Sbjct: 71 ELRKKVHP 78
Score = 111 bits (267), Expect = 1e-24
Identities = 50/58 (86%), Positives = 55/58 (94%)
Frame = +2
Query: 239 EKGNAAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 412
+K + AVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 74 KKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 129 bits (312), Expect = 4e-30
Identities = 60/68 (88%), Positives = 65/68 (95%)
Frame = +3
Query: 51 GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 230
G KFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKP
Sbjct: 11 GAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP 70
Query: 231 ELRKKVMP 254
ELRKKV P
Sbjct: 71 ELRKKVHP 78
Score = 111 bits (267), Expect = 1e-24
Identities = 50/58 (86%), Positives = 55/58 (94%)
Frame = +2
Query: 239 EKGNAAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 412
+K + AVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 74 KKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 129 bits (312), Expect = 4e-30
Identities = 60/68 (88%), Positives = 65/68 (95%)
Frame = +3
Query: 51 GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 230
G KFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKP
Sbjct: 11 GAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP 70
Query: 231 ELRKKVMP 254
ELRKKV P
Sbjct: 71 ELRKKVHP 78
Score = 111 bits (267), Expect = 1e-24
Identities = 50/58 (86%), Positives = 55/58 (94%)
Frame = +2
Query: 239 EKGNAAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 412
+K + AVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 74 KKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal
protein L23 protein.
Length = 134
Score = 129 bits (312), Expect = 4e-30
Identities = 60/68 (88%), Positives = 65/68 (95%)
Frame = +3
Query: 51 GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 230
G KFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKP
Sbjct: 5 GAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP 64
Query: 231 ELRKKVMP 254
ELRKKV P
Sbjct: 65 ELRKKVHP 72
Score = 111 bits (267), Expect = 1e-24
Identities = 50/58 (86%), Positives = 55/58 (94%)
Frame = +2
Query: 239 EKGNAAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 412
+K + AVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 68 KKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 125
>AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 129 bits (312), Expect = 4e-30
Identities = 60/68 (88%), Positives = 65/68 (95%)
Frame = +3
Query: 51 GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 230
G KFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKP
Sbjct: 11 GAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP 70
Query: 231 ELRKKVMP 254
ELRKKV P
Sbjct: 71 ELRKKVHP 78
Score = 111 bits (267), Expect = 1e-24
Identities = 50/58 (86%), Positives = 55/58 (94%)
Frame = +2
Query: 239 EKGNAAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 412
+K + AVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 74 KKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>BC034378-1|AAH34378.1| 77|Homo sapiens RPL23 protein protein.
Length = 77
Score = 126 bits (303), Expect = 5e-29
Identities = 58/65 (89%), Positives = 63/65 (96%)
Frame = +3
Query: 51 GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 230
G KFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKP
Sbjct: 11 GAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP 70
Query: 231 ELRKK 245
ELRKK
Sbjct: 71 ELRKK 75
>AY172136-1|AAO31738.1| 1906|Homo sapiens retinoic acid induced 1
protein.
Length = 1906
Score = 29.5 bits (63), Expect = 5.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 411 RGHRSAHSLATGPVMAEPFISPLLLTMTP 325
+G AH L+ GP+ P++ P LL +TP
Sbjct: 1450 KGRAGAHGLSKGPLEKRPYLGPALL-LTP 1477
>AL834486-1|CAD39144.1| 568|Homo sapiens hypothetical protein
protein.
Length = 568
Score = 29.5 bits (63), Expect = 5.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 411 RGHRSAHSLATGPVMAEPFISPLLLTMTP 325
+G AH L+ GP+ P++ P LL +TP
Sbjct: 112 KGRAGAHGLSKGPLEKRPYLGPALL-LTP 139
>AL834468-1|CAD39127.1| 1285|Homo sapiens hypothetical protein
protein.
Length = 1285
Score = 29.5 bits (63), Expect = 5.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 411 RGHRSAHSLATGPVMAEPFISPLLLTMTP 325
+G AH L+ GP+ P++ P LL +TP
Sbjct: 829 KGRAGAHGLSKGPLEKRPYLGPALL-LTP 856
>AK131400-1|BAD18547.1| 852|Homo sapiens protein ( Homo sapiens
cDNA FLJ16493 fis, clone CTONG3004550, weakly similar
to Homo sapiens SH3-domain binding protein 4 (SH3BP4).
).
Length = 852
Score = 29.5 bits (63), Expect = 5.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 248 YLFPEFRFTLFDCGHNHVPG 189
Y+ P F L CGHN++PG
Sbjct: 379 YIHPNFTVVLTVCGHNYMPG 398
>AK128850-1|BAC87646.1| 673|Homo sapiens protein ( Homo sapiens
cDNA FLJ46632 fis, clone TRACH2024730, weakly similar
to Homo sapiens SH3-domain binding protein 4 (SH3BP4).
).
Length = 673
Score = 29.5 bits (63), Expect = 5.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 248 YLFPEFRFTLFDCGHNHVPG 189
Y+ P F L CGHN++PG
Sbjct: 200 YIHPSFTVVLTVCGHNYMPG 219
>AJ313524-1|CAC86408.1| 852|Homo sapiens putative binding protein
7a5 protein.
Length = 852
Score = 29.5 bits (63), Expect = 5.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 248 YLFPEFRFTLFDCGHNHVPG 189
Y+ P F L CGHN++PG
Sbjct: 379 YIHPSFTVVLTVCGHNYMPG 398
>AB058723-1|BAB47449.1| 1644|Homo sapiens KIAA1820 protein protein.
Length = 1644
Score = 29.5 bits (63), Expect = 5.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 411 RGHRSAHSLATGPVMAEPFISPLLLTMTP 325
+G AH L+ GP+ P++ P LL +TP
Sbjct: 1454 KGRAGAHGLSKGPLEKRPYLGPALL-LTP 1481
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,535,046
Number of Sequences: 237096
Number of extensions: 1704880
Number of successful extensions: 4727
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4727
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3872123864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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