Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40327
(458 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal prot... 119 9e-28
Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z68213-2|CAA92437.1| 388|Caenorhabditis elegans Hypothetical pr... 28 3.8
X64963-1|CAA46126.1| 388|Caenorhabditis elegans protein ( C.ele... 28 3.8
X64962-1|CAA46125.1| 388|Caenorhabditis elegans sex determinati... 28 3.8
U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical pr... 27 5.0
U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z99171-7|CAB16312.1| 188|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical pr... 27 6.6
X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein. 27 6.6
X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein. 27 6.6
U52003-5|AAG00057.1| 730|Caenorhabditis elegans P granule abnor... 27 6.6
U52003-4|ABB51171.1| 771|Caenorhabditis elegans P granule abnor... 27 6.6
AF077868-1|AAC36100.1| 730|Caenorhabditis elegans PGL-1 protein. 27 6.6
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 27 8.7
>U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 23 protein.
Length = 140
Score = 119 bits (287), Expect = 9e-28
Identities = 55/67 (82%), Positives = 62/67 (92%)
Frame = +3
Query: 51 GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 230
G KFRISLGLPVGAV+NCADNTGAKNL+VI+V GI+GRLNRLP+AG GDM V +VKKGKP
Sbjct: 11 GAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKP 70
Query: 231 ELRKKVM 251
ELRKKV+
Sbjct: 71 ELRKKVL 77
Score = 109 bits (261), Expect = 1e-24
Identities = 49/52 (94%), Positives = 50/52 (96%)
Frame = +2
Query: 257 VVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 412
VVIRQRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 80 VVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical
protein T23D5.9 protein.
Length = 354
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 337 DYDTRIVLKVYKYSITPSERFPL 269
DY + V K+Y YSIT RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184
>Z68213-2|CAA92437.1| 388|Caenorhabditis elegans Hypothetical
protein C01F6.4 protein.
Length = 388
Score = 27.9 bits (59), Expect = 3.8
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Frame = -2
Query: 265 DDHCGITFFRSSGL--PFLTVATIMSPEPAAGSLFRRPLI---PWTAITYRFFAPVLSAQ 101
D++CG+T L P ++ + + + L+ PW + F + S Q
Sbjct: 37 DEYCGVTNLTVDDLNWPLISGIPLQRQRLTGATYYDDSLLDQNPWDEFSIDRFLEITSIQ 96
Query: 100 LITAPTGRPR--EIRNFLPRNHHVLS*TFC 17
LITA G R EI F+ + T+C
Sbjct: 97 LITAGAGYERNDEITRFVFQRTMKTIVTYC 126
>X64963-1|CAA46126.1| 388|Caenorhabditis elegans protein (
C.elegans gene fem-3. ).
Length = 388
Score = 27.9 bits (59), Expect = 3.8
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Frame = -2
Query: 265 DDHCGITFFRSSGL--PFLTVATIMSPEPAAGSLFRRPLI---PWTAITYRFFAPVLSAQ 101
D++CG+T L P ++ + + + L+ PW + F + S Q
Sbjct: 37 DEYCGVTNLTVDDLNWPLISGIPLQRQRLTGATYYDDSLLDQNPWDEFSIDRFLEITSIQ 96
Query: 100 LITAPTGRPR--EIRNFLPRNHHVLS*TFC 17
LITA G R EI F+ + T+C
Sbjct: 97 LITAGAGYERNDEITRFVFQRTMKTIVTYC 126
>X64962-1|CAA46125.1| 388|Caenorhabditis elegans sex determination
protein protein.
Length = 388
Score = 27.9 bits (59), Expect = 3.8
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Frame = -2
Query: 265 DDHCGITFFRSSGL--PFLTVATIMSPEPAAGSLFRRPLI---PWTAITYRFFAPVLSAQ 101
D++CG+T L P ++ + + + L+ PW + F + S Q
Sbjct: 37 DEYCGVTNLTVDDLNWPLISGIPLQRQRLTGATYYDDSLLDQNPWDEFSIDRFLEITSIQ 96
Query: 100 LITAPTGRPR--EIRNFLPRNHHVLS*TFC 17
LITA G R EI F+ + T+C
Sbjct: 97 LITAGAGYERNDEITRFVFQRTMKTIVTYC 126
>U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical
protein W03B1.2 protein.
Length = 814
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 181 AGSLFRRPLIPWTAITYRFFAPVLSAQLITA 89
A LFR ++P+ TY F +L L+TA
Sbjct: 562 ASCLFRSTIMPFVVFTYIFVTGILLVNLLTA 592
>Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical
protein C44C10.1 protein.
Length = 300
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +2
Query: 71 PGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 166
PG P G+ N G CD CP + +P
Sbjct: 267 PGQPGGNGNNGADGETGAPGGCDHCPPPRTAP 298
>U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical
protein K07E3.1 protein.
Length = 1061
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 38 VVVPREEIPYLPGSPSGSSNQLRRQ 112
+V+P EE+P++ SP G S + R +
Sbjct: 791 IVIPAEEVPFVSLSPYGFSGKTRNR 815
>Z99171-7|CAB16312.1| 188|Caenorhabditis elegans Hypothetical
protein F47G4.8 protein.
Length = 188
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 451 NVYSSDRARV*GNTRPQISTFFGYRPCDGRALHFALVI 338
++ S RAR+ P + F YRPC R L + ++
Sbjct: 86 SIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123
>Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.2 protein.
Length = 316
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +2
Query: 62 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 166
P PG+P + + G E CD CP + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314
>Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.1 protein.
Length = 316
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +2
Query: 62 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 166
P PG+P + + G E CD CP + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314
>X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +2
Query: 62 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 166
P PG+P + + G E CD CP + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314
>X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +2
Query: 62 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 166
P PG+P + + G E CD CP + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314
>U52003-5|AAG00057.1| 730|Caenorhabditis elegans P granule
abnormality protein 1,isoform a protein.
Length = 730
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 143 SDHIQILCPCVVGAVDYCSHWETQGDTEFPPAEPPRPLLDILL 15
SD + I+ VV A D C Q + P +EP P + +L+
Sbjct: 183 SDEVDIIRDNVVNAFDSCKPLLKQLMLDGPKSEPADPFISLLM 225
>U52003-4|ABB51171.1| 771|Caenorhabditis elegans P granule
abnormality protein 1,isoform b protein.
Length = 771
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 143 SDHIQILCPCVVGAVDYCSHWETQGDTEFPPAEPPRPLLDILL 15
SD + I+ VV A D C Q + P +EP P + +L+
Sbjct: 224 SDEVDIIRDNVVNAFDSCKPLLKQLMLDGPKSEPADPFISLLM 266
>AF077868-1|AAC36100.1| 730|Caenorhabditis elegans PGL-1 protein.
Length = 730
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 143 SDHIQILCPCVVGAVDYCSHWETQGDTEFPPAEPPRPLLDILL 15
SD + I+ VV A D C Q + P +EP P + +L+
Sbjct: 183 SDEVDIIRDNVVNAFDSCKPLLKQLMLDGPKSEPADPFISLLM 225
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = +2
Query: 62 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 166
P PG+P G E CD CP + +P
Sbjct: 315 PGQPGAPGQQGEPGEDGESGSEGACDHCPPPRTAP 349
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,568,544
Number of Sequences: 27780
Number of extensions: 259974
Number of successful extensions: 776
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -