Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40327
         (458 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   0.91 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   2.1  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   2.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.5  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 0.91
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -2

Query: 364  RALHFALVIDYDTRIVLKVYKYSITPSERFPLPDDHCGITFFRSSGLPF-LTVATIMSPE 188
            R  H+++V       +L +   S+    R  +PDD+  +   ++ G PF L V T  + E
Sbjct: 1032 RLFHYSVVPFVSNHDILNLRPLSMEKGTRPMIPDDNTSLALPKNEG-PFRLNVETAKTNE 1090



 Score = 21.0 bits (42), Expect = 6.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 241  FRSSGLPFLTVATIMSPEPAAGSLFRRPLIP 149
            F  S +PF++   I++  P +     RP+IP
Sbjct: 1034 FHYSVVPFVSNHDILNLRPLSMEKGTRPMIP 1064


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 39  WWFRGRKFRISLGLPVGA 92
           +W  G  F+   G+P+GA
Sbjct: 126 FWIHGGAFQFGSGIPMGA 143


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 39  WWFRGRKFRISLGLPVGA 92
           +W  G  F+   G+P+GA
Sbjct: 126 FWIHGGAFQFGSGIPMGA 143


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 101 VDYCSHWETQGDTEFPPAEPPRP 33
           ++YC      GD++ PP   P P
Sbjct: 323 MEYCLVNIVLGDSDTPPKPAPPP 345


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 93  VINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSG 194
           +IN +++ G K     AV+     +N   A+GSG
Sbjct: 571 IINSSNDEGGKTSPNSAVRKCMSPINGSGASGSG 604


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = +1

Query: 187 VPGT*LWPQSKRVNLNSGKR 246
           +P T LW ++ R+ +++ K+
Sbjct: 439 IPSTTLWQRAHRLGIDTPKK 458


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,708
Number of Sequences: 438
Number of extensions: 3432
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)