Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40324
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    28   1.5  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    27   2.0  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    26   6.2  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   6.2  
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    25   8.2  

>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 357 DAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLESD 485
           DA++ +   +E I E   T  +Y IRT+S  Y+  Y  S   D
Sbjct: 215 DAITSLWDPQELICERSITRMDYPIRTLSFSYDSRYLASGSED 257


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +3

Query: 450 YEQLYGKS--LESDLKGDTSGHSRDCACRCAWPIAMKTRASMKAQLKPMLKHWPPLVK 617
           YE    K+  L+SD+ G     +RD A     PIA    ++ +  +    + W P +K
Sbjct: 50  YENFVSKNHVLQSDINGKKRDSNRDKAAVVTAPIASTHESNYEESVSKFKESWLPQLK 107


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 620 QWGTDESIFNSILITRSYQQLRQIFAEYE 706
           QWGTD ++  ++  TR+ +Q++  F + E
Sbjct: 382 QWGTDFALIANMFPTRNRRQIKLKFKQEE 410


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 446  ILRTTVRQEPGIGLKRRHVG 505
            ++ T +  +PG  LK+RH+G
Sbjct: 1171 MMPTNIEHDPGCTLKKRHIG 1190


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 492 GDTSGHSRDCACRCAWPIAMKTRASMKAQLKPMLKH 599
           GD  G + D   RC W +  K     KA+  P L H
Sbjct: 54  GDPLGPTGDGG-RCVWNVLNKGTRFFKAEFNPSLVH 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,582
Number of Sequences: 5004
Number of extensions: 51409
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)