Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40324
(717 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37033| Best HMM Match : Annexin (HMM E-Value=0) 81 1e-15
SB_26806| Best HMM Match : Annexin (HMM E-Value=0) 67 1e-11
SB_35578| Best HMM Match : Annexin (HMM E-Value=1e-19) 66 2e-11
SB_6006| Best HMM Match : Annexin (HMM E-Value=2.4e-25) 51 8e-07
SB_47771| Best HMM Match : Annexin (HMM E-Value=0) 51 1e-06
SB_7681| Best HMM Match : Annexin (HMM E-Value=0) 46 4e-05
SB_15593| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_49976| Best HMM Match : SEC-C (HMM E-Value=0.95) 31 0.71
SB_49312| Best HMM Match : Mucin (HMM E-Value=0.19) 31 1.2
SB_12472| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_58305| Best HMM Match : Band_41 (HMM E-Value=4.8e-08) 29 2.8
SB_25942| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_31195| Best HMM Match : PspA_IM30 (HMM E-Value=1) 28 6.6
SB_18204| Best HMM Match : Phage_integr_N (HMM E-Value=0.24) 28 6.6
SB_6267| Best HMM Match : DUF930 (HMM E-Value=3.6) 28 6.6
SB_7925| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_5137| Best HMM Match : Phage_integrase (HMM E-Value=0.11) 28 8.7
>SB_37033| Best HMM Match : Annexin (HMM E-Value=0)
Length = 287
Score = 80.6 bits (190), Expect = 1e-15
Identities = 39/85 (45%), Positives = 54/85 (63%)
Frame = +3
Query: 252 QDLISELKSELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSNYGI 431
+DLI +LKSE+ G E+ ++ALMTP + A L A+ G+GTDE +IE+L T +N I
Sbjct: 132 RDLIKDLKSEVGGYFEDTVIALMTPPAEYDATLLRKAIKGLGTDEAVLIEVLTTRTNDEI 191
Query: 432 RTISAFYEQLYGKSLESDLKGDTSG 506
I Y L+ + LE D+ GDTSG
Sbjct: 192 IAIRNAYNTLFSRDLEKDIAGDTSG 216
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/28 (67%), Positives = 22/28 (78%)
Frame = +2
Query: 620 QWGTDESIFNSILITRSYQQLRQIFAEY 703
+WGTDES FNSIL +RS+ QLR F EY
Sbjct: 236 RWGTDESKFNSILASRSFDQLRATFNEY 263
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/88 (26%), Positives = 42/88 (47%)
Frame = +3
Query: 375 GTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLESDLKGDTSGHSRDCACRCAWPIAMK 554
G D +A++ +LC+ +N + IS Y+ ++G+ L DLK + G+ D P A
Sbjct: 101 GCDNKALMYLLCSRTNSQRQRISLEYKTMFGRDLIKDLKSEVGGYFEDTVIALMTPPAEY 160
Query: 555 TRASMKAQLKPMLKHWPPLVKVNGEPTN 638
++ +K + L++V TN
Sbjct: 161 DATLLRKAIKGLGTDEAVLIEVLTTRTN 188
Score = 34.3 bits (75), Expect = 0.10
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 136 LRKAMKGFGTDEKAIIDVLCRRGIVQRLEIAETFKTNYGK 255
LRKA+KG GTDE +I+VL R + + I + T + +
Sbjct: 165 LRKAIKGLGTDEAVLIEVLTTRTNDEIIAIRNAYNTLFSR 204
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 133 TLRKAMKGFGTDEKAIIDVLCRRGIVQRLEIAETFKTNYGK 255
TL A G D KA++ +LC R QR I+ +KT +G+
Sbjct: 92 TLDIASNKPGCDNKALMYLLCSRTNSQRQRISLEYKTMFGR 132
>SB_26806| Best HMM Match : Annexin (HMM E-Value=0)
Length = 829
Score = 67.3 bits (157), Expect = 1e-11
Identities = 31/85 (36%), Positives = 51/85 (60%)
Frame = +3
Query: 252 QDLISELKSELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSNYGI 431
+DL+ +L ++ ++ + +L+ P + L+ A+ G+GT E +IEILCT SN I
Sbjct: 488 KDLVEQLDGKVAIDVHEAVTSLLLPATKADVRSLYYAMKGLGTKEAQLIEILCTRSNAEI 547
Query: 432 RTISAFYEQLYGKSLESDLKGDTSG 506
+ I Y + YG+SL D+K +TSG
Sbjct: 548 QEIKQEYNKKYGRSLTDDMKSETSG 572
Score = 41.5 bits (93), Expect = 7e-04
Identities = 22/77 (28%), Positives = 36/77 (46%)
Frame = +2
Query: 485 LKRRHVGTFKRLCVSLCMANRDENQGIDXXXXXXXXXXXXXXXXXQWGTDESIFNSILIT 664
+K G F+ L +L +RDE+ ++ +WGTDE F +IL
Sbjct: 566 MKSETSGDFENLLETLLKGSRDESTDVNKELVTKDAAALVSAGVARWGTDEDQFITILSQ 625
Query: 665 RSYQQLRQIFAEYEALT 715
RS ++ + AEY+ L+
Sbjct: 626 RSSAHVQAVLAEYKTLS 642
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +2
Query: 545 RDENQGIDXXXXXXXXXXXXXXXXXQWGTDESIFNSILITRSYQQLRQIFAEY 703
RDE+ I+ +WGTDE F I TRSY QL+ +F EY
Sbjct: 160 RDESDEINEDLAHKDAEALIEAGIKKWGTDEDCFIEIFTTRSYPQLQAMFPEY 212
Score = 37.5 bits (83), Expect = 0.011
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1
Query: 133 TLRKAMKGFGTDEKAIIDVLCRRGIVQRLEIAETFKTNYGKT 258
+L AMKG GT E +I++LC R + EI + + YG++
Sbjct: 520 SLYYAMKGLGTKEAQLIEILCTRSNAEIQEIKQEYNKKYGRS 561
Score = 35.9 bits (79), Expect = 0.033
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +2
Query: 539 ANRDENQGIDXXXXXXXXXXXXXXXXXQWGTDESIFNSILITRSYQQLRQIFAEYEALT 715
A RDE+ ID +WGT+E F +IL RS ++ + AEY L+
Sbjct: 757 ATRDESTKIDEDLVTQDAAALVSAGVARWGTEEDQFITILTQRSSAHVQAVLAEYRTLS 815
Score = 31.5 bits (68), Expect = 0.71
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Frame = +3
Query: 345 KELHDAVSGI---GTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLESDLKGDTSGHSR 515
++LH+AV+ + G + +A + + N I +I Y++ YG SLE D+K +TSG
Sbjct: 60 EDLHEAVAAMLLPGNEADART-LYFAMKN--IDSIKEEYQKKYGCSLEDDVKEETSGDFE 116
Query: 516 D 518
D
Sbjct: 117 D 117
>SB_35578| Best HMM Match : Annexin (HMM E-Value=1e-19)
Length = 146
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/61 (52%), Positives = 44/61 (72%)
Frame = +3
Query: 252 QDLISELKSELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSNYGI 431
+DL+++LKSEL+GNLE ++A+M P + AK L + G GTDEE +I+ILCT SN G
Sbjct: 32 KDLMNDLKSELSGNLEECLLAMMEPSVLYDAKCLRRGMRGAGTDEETLIDILCTRSNQGN 91
Query: 432 R 434
R
Sbjct: 92 R 92
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/62 (37%), Positives = 29/62 (46%)
Frame = +2
Query: 518 LCVSLCMANRDENQGIDXXXXXXXXXXXXXXXXXQWGTDESIFNSILITRSYQQLRQIFA 697
LC NRD N +D +WGTDES FN +L +RS+ QL+ F
Sbjct: 83 LCTRSNQGNRDTNMTVDMAKATKEAQDLYKAGEKKWGTDESRFNVVLASRSFPQLQATFN 142
Query: 698 EY 703
EY
Sbjct: 143 EY 144
Score = 37.5 bits (83), Expect = 0.011
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +3
Query: 378 TDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLESDLKGDTSGHSRDC 521
T+E +I IL SN I Y+ +YGK L +DLK + SG+ +C
Sbjct: 2 TNEAELIGILANRSNAQRVEIRKRYKTMYGKDLMNDLKSELSGNLEEC 49
Score = 35.1 bits (77), Expect = 0.057
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +1
Query: 136 LRKAMKGFGTDEKAIIDVLCRR 201
LR+ M+G GTDE+ +ID+LC R
Sbjct: 65 LRRGMRGAGTDEETLIDILCTR 86
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 163 TDEKAIIDVLCRRGIVQRLEIAETFKTNYGK 255
T+E +I +L R QR+EI + +KT YGK
Sbjct: 2 TNEAELIGILANRSNAQRVEIRKRYKTMYGK 32
>SB_6006| Best HMM Match : Annexin (HMM E-Value=2.4e-25)
Length = 803
Score = 51.2 bits (117), Expect = 8e-07
Identities = 22/57 (38%), Positives = 37/57 (64%)
Frame = +3
Query: 252 QDLISELKSELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSN 422
QD++ L+ L ++++ + + + F AK LHDA+ G+GTDE+ +IEI+CT N
Sbjct: 396 QDILEALQPHLGDDVKDPVESFFSSSSAFDAKCLHDAIKGLGTDEDLLIEIICTRKN 452
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/61 (44%), Positives = 35/61 (57%)
Frame = +3
Query: 252 QDLISELKSELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSNYGI 431
+DL ELKS L + + +L AK L++A G GTDE+A+I ILCT SN G
Sbjct: 51 KDLNEELKSVLDEEIMKALESLAEEAAMKDAKTLYEATKGFGTDEDALISILCTRSNKGQ 110
Query: 432 R 434
R
Sbjct: 111 R 111
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = +2
Query: 518 LCVSLCMANRDENQGIDXXXXXXXXXXXXXXXXXQWGTDESIFNSILITRSYQQLRQIFA 697
LC RDE++ D WGTDE F + RS+ Q+ + A
Sbjct: 102 LCTRSNKGQRDESKEADIHLAKKDAKDLMEAGVASWGTDEGAFIRVFTQRSFTQISAMCA 161
Query: 698 EYEALT 715
EY+ LT
Sbjct: 162 EYKKLT 167
Score = 35.9 bits (79), Expect = 0.033
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +1
Query: 133 TLRKAMKGFGTDEKAIIDVLCRR 201
TL +A KGFGTDE A+I +LC R
Sbjct: 83 TLYEATKGFGTDEDALISILCTR 105
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 136 LRKAMKGFGTDEKAIIDVLCRR 201
L A+KG GTDE +I+++C R
Sbjct: 429 LHDAIKGLGTDEDLLIEIICTR 450
>SB_47771| Best HMM Match : Annexin (HMM E-Value=0)
Length = 529
Score = 50.8 bits (116), Expect = 1e-06
Identities = 24/40 (60%), Positives = 31/40 (77%)
Frame = +1
Query: 136 LRKAMKGFGTDEKAIIDVLCRRGIVQRLEIAETFKTNYGK 255
L+KAMKGFG+DE+AII+VL + QRL IA++FK Y K
Sbjct: 311 LKKAMKGFGSDEEAIIEVLQSCNLEQRLAIAQSFKQQYDK 350
Score = 45.2 bits (102), Expect = 5e-05
Identities = 19/59 (32%), Positives = 34/59 (57%)
Frame = +3
Query: 252 QDLISELKSELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSNYG 428
+DL+ +L ++ ++ + +L+ P + L+ A+ G+GT E +IE LCT SN G
Sbjct: 91 KDLVEQLDGKVADDVHEAVTSLLLPATQADVRSLYYAMKGLGTKEAQLIETLCTRSNTG 149
Score = 44.4 bits (100), Expect = 9e-05
Identities = 23/59 (38%), Positives = 36/59 (61%)
Frame = +3
Query: 342 AKELHDAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLESDLKGDTSGHSRD 518
A++L A+ G G+DEEAIIE+L + + I+ ++Q Y K L ++LK + SG D
Sbjct: 308 AEKLKKAMKGFGSDEEAIIEVLQSCNLEQRLAIAQSFKQQYDKDLVNELKSELSGKFED 366
Score = 41.5 bits (93), Expect = 7e-04
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +3
Query: 252 QDLISELKSELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAII 398
+DL++ELKSEL+G E+ IVAL+ P A LH A+ + I+
Sbjct: 350 KDLVNELKSELSGKFEDAIVALLLPPEQLDANALHGAMQAKRVSADEIV 398
Score = 37.1 bits (82), Expect = 0.014
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +2
Query: 620 QWGTDESIFNSILITRSYQQLRQIFAEYE 706
+WGTDES+F IL RS QLR ++ Y+
Sbjct: 417 KWGTDESVFTKILTCRSDLQLRALYQAYQ 445
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 133 TLRKAMKGFGTDEKAIIDVLCRR 201
+L AMKG GT E +I+ LC R
Sbjct: 123 SLYYAMKGLGTKEAQLIETLCTR 145
>SB_7681| Best HMM Match : Annexin (HMM E-Value=0)
Length = 426
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/85 (27%), Positives = 47/85 (55%)
Frame = +3
Query: 252 QDLISELKSELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSNYGI 431
+D+++ + E++G+L+ + P +F A L ++ G GTD+ +I ++ + S +
Sbjct: 61 RDIMNSIDREMSGDLKAGLQCARNPAEYF-ADRLWKSMKGAGTDDSLLIRVVVSRSEVDL 119
Query: 432 RTISAFYEQLYGKSLESDLKGDTSG 506
I A + Q Y K++ ++GD SG
Sbjct: 120 VEIKASFLQKYHKTVYKMIEGDCSG 144
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = +2
Query: 542 NRDENQGIDXXXXXXXXXXXXXXXXXQWGTDESIFNSILITRSYQQLRQIFAEY 703
NRD N +D +WGTDES FN +L +RS+ QL+ F EY
Sbjct: 2 NRDTNMTVDMAKATKEAQDLYKAGEKKWGTDESRFNVVLASRSFPQLQATFNEY 55
Score = 35.1 bits (77), Expect = 0.057
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 136 LRKAMKGFGTDEKAIIDVLCRRGIVQRLEIAETFKTNYGKT 258
L K+MKG GTD+ +I V+ R V +EI +F Y KT
Sbjct: 93 LWKSMKGAGTDDSLLIRVVVSRSEVDLVEIKASFLQKYHKT 133
>SB_15593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1593
Score = 33.9 bits (74), Expect = 0.13
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Frame = +3
Query: 306 IVALMTPLPHFYAK-ELHDAVSGIGTDEEA---IIEILCTLSNYGIRTISAFYEQLYGKS 473
+V + +F K E+HDA+ G T+ ++ +++ L ++YG + S + +L G S
Sbjct: 537 VVTVFNMTSNFTTKSEVHDAIDGAVTENDSYRKVLDFLKEWASYGNKEYSEAWIRLDGIS 596
Query: 474 LESDLKGDTSGH 509
+E+ LKG +S H
Sbjct: 597 VEA-LKGKSSWH 607
>SB_49976| Best HMM Match : SEC-C (HMM E-Value=0.95)
Length = 1037
Score = 31.5 bits (68), Expect = 0.71
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Frame = +3
Query: 258 LISELKSELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILC---TLSNYG 428
L+ +K+E TGN E + + +PHF++ + + S + E + +S G
Sbjct: 692 LLQFIKAERTGNWELHLASTAAMIPHFFSMDRPNYSSWKSKNPRVFEEFMAGNHAVSRSG 751
Query: 429 IRTISAFYEQLYGKSLESD--LKGDTSGHSRDCACRCAWPIAMKTRASMKAQLK 584
+ + +S+ +D KG G S++ A W + RAS+ LK
Sbjct: 752 QPFSQVWTDMALEQSVNADSKSKGGIVGISQNPAALQRWFLTSHERASVTTALK 805
>SB_49312| Best HMM Match : Mucin (HMM E-Value=0.19)
Length = 925
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = +1
Query: 265 ANSRVNSPATWKMSSSH**LPCPTSTLRSSTMLSQELEPTKKPSSRSCARFPTMVSVPYP 444
A N P T S +P T+ + ++ L+PTK S + PT+ +P
Sbjct: 206 AKGTYNFPLTKSTKSQPATIPVSTTKFPTEAQTTEYLQPTKTSLSSTAPPHPTVYRLPST 265
Query: 445 HFTNNCTARA 474
NN T A
Sbjct: 266 ESINNFTDTA 275
>SB_12472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 329 APLLR*GAPRCCLRNWNRRRSHHRDP 406
+P L PRCC +N N R H DP
Sbjct: 138 SPFLYEPGPRCCNQNMNNRSKCHADP 163
>SB_58305| Best HMM Match : Band_41 (HMM E-Value=4.8e-08)
Length = 275
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +3
Query: 249 WQDLISELKSELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEA---IIEILCTLS 419
W D E+K +L GNL + +A+ P + +K HD G+ T EEA +E L+
Sbjct: 84 WLDPQKEIKKQLKGNLPHFELAVKFYEP-YPSKLKHDMTRGL-TPEEADTQYLEAARKLT 141
Query: 420 NYGI 431
YG+
Sbjct: 142 MYGV 145
>SB_25942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1062
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 339 YAKELHDAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLE 479
Y K + + VSG GTD + + I T S ISA + K++E
Sbjct: 493 YVKYMRNKVSGAGTDPDEKVFISFTASEMTSSMISAQLNSFWQKAVE 539
>SB_31195| Best HMM Match : PspA_IM30 (HMM E-Value=1)
Length = 345
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 339 YAKELHDAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLE 479
Y K + + VSG GTD + + I T S ISA + K++E
Sbjct: 47 YVKYMRNKVSGAGTDPDEKVFISFTASEMTSSMISAQLNSFWQKAVE 93
>SB_18204| Best HMM Match : Phage_integr_N (HMM E-Value=0.24)
Length = 285
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 339 YAKELHDAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLE 479
Y K + + VSG GTD + + I T S ISA + K++E
Sbjct: 229 YVKYMRNKVSGAGTDPDEKVFISFTASEMTSSMISAQLNSFWQKAVE 275
>SB_6267| Best HMM Match : DUF930 (HMM E-Value=3.6)
Length = 502
Score = 28.3 bits (60), Expect = 6.6
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Frame = +1
Query: 166 DEKAIIDVLCR-RGIVQRLEIAETFKTNYGKT*LANSRVNSPATWKMSSSH**LPCPTST 342
D + +++ LC G ++ ++A + + T LAN+ +S + S +P T
Sbjct: 179 DRETLVEHLCAFEGFREQGDLAAAMRADT-PTILANT--DSVGSTSAPGSAQAMPA-TQC 234
Query: 343 LRSSTMLSQELEPTKKPSSRSCARFPTMVSVPY--PHFTNN 459
RSST S + + S+S A +PTM + Y P T N
Sbjct: 235 ARSSTTRSYRISKRARSESQSAAIWPTMSTARYGRPSCTQN 275
>SB_7925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 585 PMLKHWPPLVKVNGEPTNQSSTPSLSLAPIS 677
P+ H+P + + P N+S PS+ PIS
Sbjct: 386 PLTPHFPQIPGMYRRPLNESKLPSIPAQPIS 416
>SB_5137| Best HMM Match : Phage_integrase (HMM E-Value=0.11)
Length = 834
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 339 YAKELHDAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSL 476
Y K + + VSG GTD + + I T+S ISA L+ K++
Sbjct: 582 YVKYMRNKVSGAGTDPDEKVFISFTVSEMTSFMISAQLNSLWQKAV 627
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,106,991
Number of Sequences: 59808
Number of extensions: 421728
Number of successful extensions: 1339
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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