Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40323
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    29   0.53 
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    28   1.2  
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        27   3.7  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.9  
SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac...    26   6.5  

>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 471 KYMYLMYSFSPDLSVGRVSDPVVDSAKTALARASVSNVIR 590
           K+  L+Y+ SP + +GR  +P V+ A   L R +  N+IR
Sbjct: 52  KHCLLLYTNSPSVIIGRNQNPWVE-ANVKLCRDNFVNIIR 90


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 16  FLLVFLYFIFCTFFLLSIP 72
           F ++ +YF+FC F++  IP
Sbjct: 679 FSIIMIYFVFCVFYISLIP 697


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 133 CRMFQDLFRRYEEKN*IVKFEKMKKYIH 216
           C   + L  ++E K  I+KF K+ KY++
Sbjct: 128 CIQIKKLLGKWESKLKIIKFNKLAKYVY 155


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 483 LMYSFSPDLSVGRVSDPVVDSAKTALAR 566
           L+ +FSP  SV   S+P V+  KT+ ++
Sbjct: 203 LLQTFSPSPSVSPFSNPAVEKLKTSASK 230


>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 101 YQICSYTVHYGMDSKKNVQKIKYKKTNKNAF 9
           Y ICS T H  +  K  VQK   + T++N F
Sbjct: 100 YAICSQTSHNTITRKDIVQKAFPEGTSRNLF 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,800
Number of Sequences: 5004
Number of extensions: 48129
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)