Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40323
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0101 - 752935-753223,753311-753408,753674-753764,753844-75...    29   2.9  
09_03_0097 + 12335425-12336197,12336438-12336618,12337409-123375...    28   9.0  
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257...    28   9.0  

>07_01_0101 -
           752935-753223,753311-753408,753674-753764,753844-753882,
           754019-754110,754535-754634,754742-754828,754949-755250,
           756036-756242,756319-756405,756978-757058,757257-757365,
           758037-758093,758188-758258,758414-758521,758874-758974,
           759111-759177,759434-759535,759618-759662,759916-760511,
           761956-762065,762165-762280
          Length = 984

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +1

Query: 142 FQDLFRRYEEKN*IVKFEKMKKYIHTYRKRHVAGVNEIERLEKSISFQIPYTHIALDNW 318
           F+D     E+ +  VK +K     HTY    ++ + E +R E      I Y    LD+W
Sbjct: 352 FKDYNAAVEDLSTCVKRDKKNSSAHTYLGLTLSALGEYKRAEDEHLLGIKYDENFLDSW 410


>09_03_0097 +
           12335425-12336197,12336438-12336618,12337409-12337572,
           12338132-12338393,12338488-12338604
          Length = 498

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 540 LPLDRKRDPLRDQVRNYTLSTCIL 469
           L LD  RD + D+V NY +ST +L
Sbjct: 434 LDLDHFRDLVTDEVANYVISTALL 457


>08_02_1277 + 25823835-25825113,25825201-25825418,25825501-25825724,
            25826468-25827080,25827735-25827775,25830549-25831191,
            25832595-25834012,25834110-25834251,25834415-25834522,
            25835346-25835558,25835643-25835753,25836099-25836293,
            25836555-25836695,25836835-25836909
          Length = 1806

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
 Frame = -3

Query: 513  LRDQVRNYTLSTCILCLDTK---FQVNRMQGSVA-ITEHP 406
            +RDQ  N+ +  CI C+ T+   F V+  +G VA ++ HP
Sbjct: 1587 VRDQNGNHVIQKCIECVPTEHIGFVVSAFRGQVASLSMHP 1626


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,734,531
Number of Sequences: 37544
Number of extensions: 252473
Number of successful extensions: 548
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)