Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40323
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_40634| Best HMM Match : fn3 (HMM E-Value=0.058)                     28   6.9  
SB_28258| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_23740| Best HMM Match : PAN (HMM E-Value=0.0056)                    28   9.1  
SB_21724| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   9.1  

>SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1140

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 193 EKMKKYIHTYRKRHVAGVNEIERLEKSISFQIPYTHIAL 309
           EKMK+Y+   + + V+ VN   R+   I  +I   H AL
Sbjct: 686 EKMKEYMKALKTKKVSAVNHRPRIRIRIRIRIRIDHTAL 724


>SB_40634| Best HMM Match : fn3 (HMM E-Value=0.058)
          Length = 293

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +1

Query: 301 IALDNWLLSNAETRYLNTYIYAFK*IYTNT*TWFLRMFRYSY*TLHPIDLKLGIQAQNTC 480
           + ++  L  N   R  NT+  A K  +  T TW    F+Y   T + +  K G +A+ T 
Sbjct: 73  VPVEETLCRNITHRLSNTHSLATK--FNVTITWVQPRFQYGTITSYSVAYKKGDEAEKTA 130

Query: 481 T 483
           T
Sbjct: 131 T 131


>SB_28258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +1

Query: 301  IALDNWLLSNAETRYLNTYIYAFK*IYTNT*TWFLRMFRYSY*TLHPIDLKLGIQAQNTC 480
            + ++  L  N   R  NT+  A K  +  T TW    F+Y   T + +  K G +A+ T 
Sbjct: 898  VPVEETLCRNITHRLSNTHSLATK--FNVTITWVQPRFQYGTITSYSVAYKKGDEAEKTA 955

Query: 481  T 483
            T
Sbjct: 956  T 956


>SB_23740| Best HMM Match : PAN (HMM E-Value=0.0056)
          Length = 265

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 260 DWKNPFHFKFLIH 298
           DW NPF F+F +H
Sbjct: 230 DWSNPFQFRFTLH 242


>SB_21724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 472 FVPGYQVSSQSDARFSSYNGTSVKTRFMY*YRFI*THIC 356
           +V  Y ++SQ+     +YN TS  TR+++ Y      IC
Sbjct: 53  YVHTYNITSQATRYVQTYNTTSQATRYVHTYNTTSQAIC 91


>SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
 Frame = -3

Query: 513  LRDQVRNYTLSTCILCLD---TKFQVNRMQGSV-AITEHP 406
            ++DQ  N+ +  CI C+D    +F ++  QG V A++ HP
Sbjct: 1170 VKDQNGNHVVQKCIECVDPHALQFIIDAFQGQVYALSTHP 1209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,220,964
Number of Sequences: 59808
Number of extensions: 338355
Number of successful extensions: 2875
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2872
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)