Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40323
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF473218-1|ABQ42570.1|  765|Caenorhabditis elegans Y55D9A.1c pro...    29   4.6  
EF473217-1|ABQ42569.1|  818|Caenorhabditis elegans Y55D9A.1b pro...    29   4.6  
AL032649-5|CAM82814.1|  765|Caenorhabditis elegans Hypothetical ...    29   4.6  
AL032649-2|CAC70120.1|  818|Caenorhabditis elegans Hypothetical ...    29   4.6  
AL032649-1|CAA21701.1|  816|Caenorhabditis elegans Hypothetical ...    29   4.6  

>EF473218-1|ABQ42570.1|  765|Caenorhabditis elegans Y55D9A.1c
           protein.
          Length = 765

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 205 KYIHTYRKRHVAGVNE-IERLEKSISFQIPYTHIALDNWLLSNAETRYLNTYI 360
           K + T+  R VA +NE IE + +S+S   P   I  D W+L + E R  +TYI
Sbjct: 662 KQLSTHEAR-VAELNEMIEIVSQSVSPNQPQQLIT-DRWVLLSFEKRRYSTYI 712


>EF473217-1|ABQ42569.1|  818|Caenorhabditis elegans Y55D9A.1b
           protein.
          Length = 818

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 205 KYIHTYRKRHVAGVNE-IERLEKSISFQIPYTHIALDNWLLSNAETRYLNTYI 360
           K + T+  R VA +NE IE + +S+S   P   I  D W+L + E R  +TYI
Sbjct: 715 KQLSTHEAR-VAELNEMIEIVSQSVSPNQPQQLIT-DRWVLLSFEKRRYSTYI 765


>AL032649-5|CAM82814.1|  765|Caenorhabditis elegans Hypothetical
           protein Y55D9A.1c protein.
          Length = 765

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 205 KYIHTYRKRHVAGVNE-IERLEKSISFQIPYTHIALDNWLLSNAETRYLNTYI 360
           K + T+  R VA +NE IE + +S+S   P   I  D W+L + E R  +TYI
Sbjct: 662 KQLSTHEAR-VAELNEMIEIVSQSVSPNQPQQLIT-DRWVLLSFEKRRYSTYI 712


>AL032649-2|CAC70120.1|  818|Caenorhabditis elegans Hypothetical
           protein Y55D9A.1b protein.
          Length = 818

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 205 KYIHTYRKRHVAGVNE-IERLEKSISFQIPYTHIALDNWLLSNAETRYLNTYI 360
           K + T+  R VA +NE IE + +S+S   P   I  D W+L + E R  +TYI
Sbjct: 715 KQLSTHEAR-VAELNEMIEIVSQSVSPNQPQQLIT-DRWVLLSFEKRRYSTYI 765


>AL032649-1|CAA21701.1|  816|Caenorhabditis elegans Hypothetical
           protein Y55D9A.1a protein.
          Length = 816

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 205 KYIHTYRKRHVAGVNE-IERLEKSISFQIPYTHIALDNWLLSNAETRYLNTYI 360
           K + T+  R VA +NE IE + +S+S   P   I  D W+L + E R  +TYI
Sbjct: 713 KQLSTHEAR-VAELNEMIEIVSQSVSPNQPQQLIT-DRWVLLSFEKRRYSTYI 763


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,762,559
Number of Sequences: 27780
Number of extensions: 257067
Number of successful extensions: 629
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)