Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40322
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0656 + 5652383-5653009,5653260-5653736,5654969-5655289,565...    32   0.53 
07_01_0676 + 5062778-5063089,5063912-5064194,5064883-5065976           31   1.2  
08_02_0703 - 20188489-20190246                                         29   3.7  
06_03_1167 + 28111923-28113218                                         28   6.5  
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767...    28   6.5  

>08_01_0656 +
           5652383-5653009,5653260-5653736,5654969-5655289,
           5655434-5655589,5656062-5656127,5656196-5656315
          Length = 588

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 19/41 (46%), Positives = 21/41 (51%)
 Frame = -1

Query: 466 PKRRKECTTSCLFMPVSRSCG*SRISAWYSGTCSPAASAYS 344
           P   + CTTSC      RSCG  R   W +  CSPAA A S
Sbjct: 26  PSPTRSCTTSC------RSCGRGR---WRAPACSPAAGATS 57


>07_01_0676 + 5062778-5063089,5063912-5064194,5064883-5065976
          Length = 562

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +3

Query: 36  YNWNTSLFTIQNRVMHVLLVIYCSIALCGMC*VTLCLVFDIKQSILFWINVVF--HRRTL 209
           YN NT L    +R    + V+  ++A+C    V  C ++  +  + F ++ +   HR T+
Sbjct: 450 YNQNTGLAIHADRAPFKIFVVSNTVAMCSAIVVVFCFIWAWRDPVKFKLDQLTWGHRLTV 509

Query: 210 PSC 218
            +C
Sbjct: 510 VAC 512


>08_02_0703 - 20188489-20190246
          Length = 585

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
 Frame = +1

Query: 217 ALVCVVLSWCASAG---PLPPSCA----PPLLRTIPGPHVSARL*TRSSNCTLRLLGNRS 375
           AL   + +WCA  G   P PPS A      LLR +P    +AR  T ++    R   N S
Sbjct: 103 ALRAAIRTWCARHGRAPPAPPSAAEAREAALLRAVPA--AAARTTTVAAMVPARSSSNLS 160

Query: 376 RNTKR*SATTRNS 414
            +++  +A+T +S
Sbjct: 161 CSSRASAASTSSS 173


>06_03_1167 + 28111923-28113218
          Length = 431

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 380 IPSADPRLPATPGHRHEE-AGRRALLPPFRSSPL 478
           I +A+PR+PA   H+ ++ AG   +L P +  P+
Sbjct: 147 IAAANPRVPAAAQHQQQQRAGTARILKPIKEPPV 180


>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
            13676868-13677330,13677855-13678036,13678093-13678235,
            13678315-13678423,13679000-13679456,13680490-13682473,
            13682507-13682626,13682920-13682971
          Length = 1467

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
 Frame = -2

Query: 378  PGPVPQQPQRTVR*TCSEPGRNVWPWDRSQ----QRRRTAGRERPSGRAP*QHHAHERK 214
            P P+ Q P R       EP +   PW  +     +R R  G +R   R   +HH H+R+
Sbjct: 1262 PPPINQCPYRP-----PEPQQRPRPWSNNSSSYPERYRYDGHDRDHHRHDRRHHGHDRR 1315


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,238,855
Number of Sequences: 37544
Number of extensions: 386635
Number of successful extensions: 1330
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)