Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40322
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               29   3.8  
SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)              29   5.0  
SB_17034| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_33208| Best HMM Match : Pepsin-I3 (HMM E-Value=4.7)                 28   8.8  

>SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
 Frame = +3

Query: 18  HSTIDNYNWNTSLFTIQNR-----VMHVLLVIYCSIALCGMC 128
           HS ID  ++ T +FT+Q R     ++H  + +YC +AL  +C
Sbjct: 28  HSVIDVLHYET-IFTLQERRHGAVIIHTFICLYCFVALAILC 68


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +2

Query: 374 PGIPSADPRLPATPGHRHEEAG---RRALLPPFRSSPLICEVTAIPLLTTTMRLNIL 535
           P +P     LP  P  RH +A    R A  PP  S+P   + TA+PLLTT   L ++
Sbjct: 654 PLLPLLTLPLPP-PTVRHPQATPLPRLATHPPPLSTPQPRQSTALPLLTTRQLLQVI 709


>SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)
          Length = 2489

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 185 INPKKNRLFYIKH*AQSHLTHT 120
           +NP  N LF++ H    H THT
Sbjct: 897 VNPMSNHLFHLPHETPRHTTHT 918


>SB_17034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 380 IPSADPRLPATPGHRHEEAGRRALLPPFRSSPLICEVTAIPLL 508
           +P   P+ P     R+ ++G    + PF S PL+  +T  P++
Sbjct: 63  VPEIPPKAPRQRSPRNSQSGESPCISPFASLPLV-SMTQSPVM 104


>SB_33208| Best HMM Match : Pepsin-I3 (HMM E-Value=4.7)
          Length = 256

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 312 RFCQALNTFIELYA-EAAGEQVPEYQALIRDYPQLLDTG 425
           + C+ + T++ +Y  +A G+QVP+   + + +   +DTG
Sbjct: 29  QLCEGVATYLYIYRIDANGDQVPKCAGIRQGFKPAVDTG 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,834,339
Number of Sequences: 59808
Number of extensions: 453720
Number of successful extensions: 1211
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)