Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40322
         (721 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC045643-1|AAH45643.1| 1065|Homo sapiens hypothetical protein LO...    33   1.0  
AL353795-1|CAH70992.1| 1079|Homo sapiens chromosome 9 open readi...    33   1.0  
U50839-1|AAC35207.1| 1123|Homo sapiens g16 protein protein.            31   3.1  
BC046643-1|AAH46643.1|  601|Homo sapiens RBM6 protein protein.         31   3.1  
AF091264-1|AAD04160.1| 1123|Homo sapiens RNA binding motif prote...    31   3.1  
AF069517-1|AAC21578.1| 1123|Homo sapiens RNA binding protein DEF...    31   3.1  
AF042857-1|AAC05826.1| 1123|Homo sapiens lung cancer antigen NY-...    31   3.1  

>BC045643-1|AAH45643.1| 1065|Homo sapiens hypothetical protein
           LOC138724 protein.
          Length = 1065

 Score = 33.1 bits (72), Expect = 1.0
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -2

Query: 384 GIPGPVPQQPQRTVR*TCSEPGRNVWPWDRSQQRRRTAGRERPSGRAP 241
           G+    P   + TV    + PG + W W R  + R    R+ P+ RAP
Sbjct: 742 GVKAEAPLSQRWTVPELLTHPGIHAWQWSRELKLRLKKLRQSPASRAP 789


>AL353795-1|CAH70992.1| 1079|Homo sapiens chromosome 9 open reading
           frame 131 protein.
          Length = 1079

 Score = 33.1 bits (72), Expect = 1.0
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -2

Query: 384 GIPGPVPQQPQRTVR*TCSEPGRNVWPWDRSQQRRRTAGRERPSGRAP 241
           G+    P   + TV    + PG + W W R  + R    R+ P+ RAP
Sbjct: 756 GVKAEAPLSQRWTVPELLTHPGIHAWQWSRELKLRLKKLRQSPASRAP 803


>U50839-1|AAC35207.1| 1123|Homo sapiens g16 protein protein.
          Length = 1123

 Score = 31.5 bits (68), Expect = 3.1
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = -2

Query: 381 IPGPVPQQPQRTVR*TCSEP---GRNVWPWDRSQQRRRTAGRERPSGRAP*QHHAHERKT 211
           IP P+ +QP + +R    EP    R      R   ++R A R  P  R        +R+ 
Sbjct: 583 IPAPLEKQPNQPLRPADKEPEPRKREEGQESRLGHQKREAERYLPPSRREGPTFRRDRER 642

Query: 210 EVFSYETRH*SKKESIVL 157
           E +S ETR   + ++I+L
Sbjct: 643 ESWSGETRQDGESKTIML 660


>BC046643-1|AAH46643.1|  601|Homo sapiens RBM6 protein protein.
          Length = 601

 Score = 31.5 bits (68), Expect = 3.1
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = -2

Query: 381 IPGPVPQQPQRTVR*TCSEP---GRNVWPWDRSQQRRRTAGRERPSGRAP*QHHAHERKT 211
           IP P+ +QP + +R    EP    R      R   ++R A R  P  R        +R+ 
Sbjct: 61  IPAPLEKQPNQPLRPADKEPEPRKREEGQESRLGHQKREAERYLPPSRREGPTFRRDRER 120

Query: 210 EVFSYETRH*SKKESIVL 157
           E +S ETR   + ++I+L
Sbjct: 121 ESWSGETRQDGESKTIML 138


>AF091264-1|AAD04160.1| 1123|Homo sapiens RNA binding motif protein
           6 protein.
          Length = 1123

 Score = 31.5 bits (68), Expect = 3.1
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = -2

Query: 381 IPGPVPQQPQRTVR*TCSEP---GRNVWPWDRSQQRRRTAGRERPSGRAP*QHHAHERKT 211
           IP P+ +QP + +R    EP    R      R   ++R A R  P  R        +R+ 
Sbjct: 583 IPAPLEKQPNQPLRPADKEPEPRKREEGQESRLGHQKREAERYLPPSRREGPTFRRDRER 642

Query: 210 EVFSYETRH*SKKESIVL 157
           E +S ETR   + ++I+L
Sbjct: 643 ESWSGETRQDGESKTIML 660


>AF069517-1|AAC21578.1| 1123|Homo sapiens RNA binding protein DEF-3
           protein.
          Length = 1123

 Score = 31.5 bits (68), Expect = 3.1
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = -2

Query: 381 IPGPVPQQPQRTVR*TCSEP---GRNVWPWDRSQQRRRTAGRERPSGRAP*QHHAHERKT 211
           IP P+ +QP + +R    EP    R      R   ++R A R  P  R        +R+ 
Sbjct: 583 IPAPLEKQPNQPLRPADKEPEPRKREEGQESRLGHQKREAERYLPPSRREGPTFRRDREK 642

Query: 210 EVFSYETRH*SKKESIVL 157
           E +S ETR   + ++I+L
Sbjct: 643 ESWSGETRQDGESKTIML 660


>AF042857-1|AAC05826.1| 1123|Homo sapiens lung cancer antigen
           NY-LU-12 variant A protein.
          Length = 1123

 Score = 31.5 bits (68), Expect = 3.1
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = -2

Query: 381 IPGPVPQQPQRTVR*TCSEP---GRNVWPWDRSQQRRRTAGRERPSGRAP*QHHAHERKT 211
           IP P+ +QP + +R    EP    R      R   ++R A R  P  R        +R+ 
Sbjct: 583 IPAPLEKQPNQPLRPADKEPEPRKREEGQESRLGHQKREAERYLPPSRREGPTFRRDRER 642

Query: 210 EVFSYETRH*SKKESIVL 157
           E +S ETR   + ++I+L
Sbjct: 643 ESWSGETRQDGESKTIML 660


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,286,769
Number of Sequences: 237096
Number of extensions: 2233108
Number of successful extensions: 6274
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6270
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)