Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40322
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79694-2|CAB01960.1|  173|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U49941-4|AAP46282.1|  271|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U49941-3|AAP46281.1|  451|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U49941-2|AAB53873.1|  757|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>Z79694-2|CAB01960.1|  173|Caenorhabditis elegans Hypothetical
           protein C15A11.2 protein.
          Length = 173

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 361 LGNRSRNTKR*SATTRNSWTPA*RGRTSCTPSSVSVVAAD 480
           +GN+S+NTK+  A  + S T   + +TS    S SV + D
Sbjct: 1   MGNKSKNTKKEGAEKKRSKTKTAKKKTSTLTHSKSVTSTD 40


>U49941-4|AAP46282.1|  271|Caenorhabditis elegans Hypothetical
           protein K10B3.6c protein.
          Length = 271

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 163 NRFFFGLMSCFIGEHFRLALVCVVLSWCASAGPLPPS 273
           +R      SCF    F  +L  + + +CA A P+P S
Sbjct: 3   HRKLAAFFSCFASRRFSFSLYSLYILFCAGAFPIPRS 39


>U49941-3|AAP46281.1|  451|Caenorhabditis elegans Hypothetical
           protein K10B3.6b protein.
          Length = 451

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 163 NRFFFGLMSCFIGEHFRLALVCVVLSWCASAGPLPPS 273
           +R      SCF    F  +L  + + +CA A P+P S
Sbjct: 3   HRKLAAFFSCFASRRFSFSLYSLYILFCAGAFPIPRS 39


>U49941-2|AAB53873.1|  757|Caenorhabditis elegans Hypothetical
           protein K10B3.6a protein.
          Length = 757

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 163 NRFFFGLMSCFIGEHFRLALVCVVLSWCASAGPLPPS 273
           +R      SCF    F  +L  + + +CA A P+P S
Sbjct: 3   HRKLAAFFSCFASRRFSFSLYSLYILFCAGAFPIPRS 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,971,724
Number of Sequences: 27780
Number of extensions: 341706
Number of successful extensions: 1034
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)