Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40322
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.72 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.7  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   8.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 383 PSADPRLPATPGHRHEEAGRRALLPPFRSSPLICEVTAIPLLTTT 517
           P+        PG+  E+ G R L PP  S+ L   +T     TTT
Sbjct: 73  PAFSSSCDPVPGNL-EQIGSRPLHPPASSTSLPATITTTTTTTTT 116


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = +1

Query: 331 TRSSNCTLRLL 363
           TRS++CTLR+L
Sbjct: 41  TRSADCTLRVL 51


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 386 SADPRLPATPGHRHE 430
           SADP +  T GH H+
Sbjct: 162 SADPMVNYTLGHHHQ 176


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 365 GTGPGIPSADPRLPATPGHRHEEAGRRALLPPFRSSPL 478
           G+G   PS  P    +P  +      R  + P R+SP+
Sbjct: 387 GSGGSFPSLYPMATTSPQSQSTIQTLRPQVSPDRTSPM 424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,252
Number of Sequences: 438
Number of extensions: 4325
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)