BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV40320 (738 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha... 29 0.91 SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 28 1.6 SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 27 2.1 SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 27 2.1 SPAC23A1.03 |apt1||adenine phosphoribosyltransferase |Schizosacc... 26 4.9 >SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccharomyces pombe|chr 2|||Manual Length = 514 Score = 28.7 bits (61), Expect = 0.91 Identities = 9/20 (45%), Positives = 14/20 (70%) Frame = +2 Query: 590 WQSNHTVLITYSIVEQWINW 649 W+ N T +T SI+E+W+ W Sbjct: 252 WRYNGTARMTTSIMEEWLRW 271 >SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizosaccharomyces pombe|chr 1|||Manual Length = 758 Score = 27.9 bits (59), Expect = 1.6 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = -2 Query: 332 RLYHYHQQADQQLHTHQYTVVLGGH 258 R+Y Y Q+ D++ +TH V+ G H Sbjct: 232 RIYKYLQEYDEKTNTHSLIVLCGDH 256 >SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|||Manual Length = 1018 Score = 27.5 bits (58), Expect = 2.1 Identities = 10/27 (37%), Positives = 19/27 (70%) Frame = +2 Query: 281 IDVYVAVGQLVGDNDIGVANKAILITS 361 +D+ ++G+ + DN+I V KA+L+ S Sbjct: 39 VDLVTSIGEYLTDNNISVRAKAVLLLS 65 >SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 522 Score = 27.5 bits (58), Expect = 2.1 Identities = 8/20 (40%), Positives = 14/20 (70%) Frame = +2 Query: 590 WQSNHTVLITYSIVEQWINW 649 W+SN +T +I+E+W+ W Sbjct: 253 WRSNGKASMTTAIMEEWLRW 272 >SPAC23A1.03 |apt1||adenine phosphoribosyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 188 Score = 26.2 bits (55), Expect = 4.9 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Frame = -3 Query: 259 IGLDITALAISSTASLRT-CAFSCRSKYMKLPVKLLITSPGENFSKHS 119 +GL+ T +LR CAF K KLP L++ S + +S S Sbjct: 61 VGLEARGFLFGPTLALRANCAFVPVRKPNKLPGDLVVVSYNKEYSTDS 108 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,022,389 Number of Sequences: 5004 Number of extensions: 61767 Number of successful extensions: 137 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 132 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 137 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 349251756 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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