Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40320
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    29   0.91 
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    28   1.6  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    27   2.1  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    27   2.1  
SPAC23A1.03 |apt1||adenine phosphoribosyltransferase |Schizosacc...    26   4.9  

>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 590 WQSNHTVLITYSIVEQWINW 649
           W+ N T  +T SI+E+W+ W
Sbjct: 252 WRYNGTARMTTSIMEEWLRW 271


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 332 RLYHYHQQADQQLHTHQYTVVLGGH 258
           R+Y Y Q+ D++ +TH   V+ G H
Sbjct: 232 RIYKYLQEYDEKTNTHSLIVLCGDH 256


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 281 IDVYVAVGQLVGDNDIGVANKAILITS 361
           +D+  ++G+ + DN+I V  KA+L+ S
Sbjct: 39  VDLVTSIGEYLTDNNISVRAKAVLLLS 65


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 590 WQSNHTVLITYSIVEQWINW 649
           W+SN    +T +I+E+W+ W
Sbjct: 253 WRSNGKASMTTAIMEEWLRW 272


>SPAC23A1.03 |apt1||adenine phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 259 IGLDITALAISSTASLRT-CAFSCRSKYMKLPVKLLITSPGENFSKHS 119
           +GL+        T +LR  CAF    K  KLP  L++ S  + +S  S
Sbjct: 61  VGLEARGFLFGPTLALRANCAFVPVRKPNKLPGDLVVVSYNKEYSTDS 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,022,389
Number of Sequences: 5004
Number of extensions: 61767
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)