Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40320
         (738 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1049 + 23944526-23945473                                         29   2.9  
10_08_0977 - 21985149-21985277,21985348-21985722,21985824-219858...    28   8.9  

>08_02_1049 + 23944526-23945473
          Length = 315

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 268 WEGIGLDITALAISSTASLRTCAFSCRSKYMKL 170
           WE +  D+ A   +S A+LR     CR K  KL
Sbjct: 58  WEEVAADVAARCAASGAALRKTGTQCRHKLEKL 90


>10_08_0977 -
           21985149-21985277,21985348-21985722,21985824-21985874,
           21985964-21986189,21986289-21986359,21986430-21986549,
           21986641-21986835,21986921-21986985,21987894-21987984,
           21988700-21988761,21988854-21988904,21989172-21989273,
           21989873-21989980,21990071-21990134,21990246-21990392
          Length = 618

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +3

Query: 90  LVDLICEVLTLCFEKFSPGEVIKSFTGN--FMYLLRHENAHVRRLA 221
           LVD+    LT+ F +  P EV K+ TGN     + R+ +AH RR+A
Sbjct: 485 LVDMESAYLTVEFFRKLPQEVDKTGTGNPSTPSVDRYADAHFRRIA 530


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,696,090
Number of Sequences: 37544
Number of extensions: 336291
Number of successful extensions: 763
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)