Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40320
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40007| Best HMM Match : Arm (HMM E-Value=0.84)                      52   6e-07
SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)         29   5.2  
SB_56074| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_40007| Best HMM Match : Arm (HMM E-Value=0.84)
          Length = 274

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 24/67 (35%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
 Frame = +1

Query: 505 AGYIDIMVQEIQSLDVLYQLNILELMSTLA-IKPYGINYLLNSGAMDKLVTVVIDLKTSP 681
           +G  + ++ E+   DVL Q+N LEL++ LA I P G+ YL   G + KL  ++++++T P
Sbjct: 207 SGIFEKLISELDGRDVLVQMNCLELLTKLASISPSGLEYLDQKGVVTKLNNLLLEVETDP 266

Query: 682 VGGILIP 702
           +  ++IP
Sbjct: 267 LITLIIP 273


>SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)
          Length = 1907

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +3

Query: 81   DRHLVDLICEVLTLCFEKFSPGEVIKSFTGNFMYLLRHENAHVRRLAVDEIAKAVISSPM 260
            D  L   IC VL LC+ + SP +       +    LR E  +  R  +  + K + ++  
Sbjct: 1495 DPRLYSSICRVLALCYGRVSPSDAAHYSNQSLGVTLRQEALNSSRKKLRRLMKEISTNEK 1554

Query: 261  PS 266
             S
Sbjct: 1555 SS 1556


>SB_56074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 326 YHYHQQADQQLHTHQYTVVLGGHWA*YHCFS 234
           YH HQ + +  H HQY V +  H   Y  FS
Sbjct: 305 YHGHQYSVRARHGHQYKVFVRYHGHQYKVFS 335


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,096,545
Number of Sequences: 59808
Number of extensions: 406788
Number of successful extensions: 802
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)