Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40320
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077533-2|AAP40529.1|  972|Caenorhabditis elegans Hypothetical ...    31   0.85 
AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical ...    31   0.85 
AF077534-7|AAK71376.1|  319|Caenorhabditis elegans Prion-like-(q...    29   4.5  
Z70780-8|CAA94825.2|  266|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AF077533-2|AAP40529.1|  972|Caenorhabditis elegans Hypothetical
           protein F54G2.1b protein.
          Length = 972

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = +3

Query: 78  FDRHLVDLICEVLTLCFEKFSPGEVIKSFTGNFMYLLRHENAHVRRLAVDEIAKAVISSP 257
           + R LVD+ICE++T+  +K   G   + FT      +  +  H+   A++   +   S  
Sbjct: 716 YTRQLVDVICEIVTVYTQKIISGLEAEGFTQELQAFIPSQLLHLLCAAINNCEQVRRSLN 775

Query: 258 MPSQYH 275
           +  + H
Sbjct: 776 ITEKLH 781


>AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical
           protein F54G2.1a protein.
          Length = 1126

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = +3

Query: 78  FDRHLVDLICEVLTLCFEKFSPGEVIKSFTGNFMYLLRHENAHVRRLAVDEIAKAVISSP 257
           + R LVD+ICE++T+  +K   G   + FT      +  +  H+   A++   +   S  
Sbjct: 700 YTRQLVDVICEIVTVYTQKIISGLEAEGFTQELQAFIPSQLLHLLCAAINNCEQVRRSLN 759

Query: 258 MPSQYH 275
           +  + H
Sbjct: 760 ITEKLH 765


>AF077534-7|AAK71376.1|  319|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 48
           protein.
          Length = 319

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 323 HYHQQADQQLHTHQ 282
           HYHQQ  QQ H HQ
Sbjct: 47  HYHQQQQQQQHAHQ 60


>Z70780-8|CAA94825.2|  266|Caenorhabditis elegans Hypothetical
           protein F46B6.9 protein.
          Length = 266

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = -3

Query: 334 NAYIIITNKLTNSYIHINILWYWEGIGLDITALAISSTASLRTCAFSCRSKYMKLPVKLL 155
           NA   + N L +S   I +  Y  G  + +T L +  T       +SCR+K+MK  +  +
Sbjct: 44  NAIDFVVNHLKSSDHRIKLYVY--GCVVLVTILHVMFTCLSLYGIYSCRAKFMKPLIVDI 101

Query: 154 ITS 146
           ITS
Sbjct: 102 ITS 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,388,835
Number of Sequences: 27780
Number of extensions: 338147
Number of successful extensions: 799
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)