Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40320
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24050.1 68417.m03455 short-chain dehydrogenase/reductase (SD...    29   4.3  
At3g46670.1 68416.m05066 UDP-glucoronosyl/UDP-glucosyl transfera...    28   5.6  
At5g54840.2 68418.m06831 GTP-binding family protein similar to S...    28   7.4  
At4g21540.1 68417.m03112 diacylglycerol kinase family protein co...    28   7.4  
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains...    27   9.8  
At1g52830.1 68414.m05973 auxin-responsive protein / indoleacetic...    27   9.8  

>At4g24050.1 68417.m03455 short-chain dehydrogenase/reductase (SDR)
           family protein contains INTERPRO family IPR002198
           Short-chain dehydrogenase/reductase (SDR) superfamily
          Length = 332

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = -3

Query: 247 ITALAISSTASLRTCAFSCRSKYMKLPVKLLITSPGENFSKHSVSTSHIKST 92
           +  L +SS AS+R   F    + + LP+ LLI + G+   +H++S   I+ T
Sbjct: 89  VMKLDLSSIASVRN--FVADFESLDLPLNLLINNAGKLAHEHAISEDGIEMT 138


>At3g46670.1 68416.m05066 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 451

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -3

Query: 232 ISSTASLRTCAFSCRSKYMKLPVKLLITSPGENFSKHSVSTSHIKSTRCLSKMLKHWSIL 53
           I ST S    AF CRS + KL    ++T   E   + +         RC    + HW+ L
Sbjct: 131 IFSTTS--ATAFVCRSAFDKLYANSILTPLKEPKGQQNELVPEFHPLRCKDFPVSHWASL 188

Query: 52  DN 47
           ++
Sbjct: 189 ES 190


>At5g54840.2 68418.m06831 GTP-binding family protein similar to
           SP|P87027 Septum-promoting GTP-binding protein 1 (GTPase
           spg1)(Sid3 protein) {Schizosaccharomyces pombe}
          Length = 215

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 614 LIPYGLIAKVDMSSKIFNWYSTSRDWISCTMISM 513
           L  + L ++  ++S +F WYS +R W    +ISM
Sbjct: 178 LFMFDLTSRSTLNS-VFGWYSQARKWNKVRLISM 210


>At4g21540.1 68417.m03112 diacylglycerol kinase family protein
           contains INTERPRO domain, IPR001206, DAG-kinase
           catalytic domain
          Length = 1240

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -2

Query: 614 LIPYGLIAKVDMSSKIFNWYSTSR-DWISC 528
           ++ +GLIA +D+ S+ F W  ++R D+  C
Sbjct: 525 MLAWGLIADIDIESEKFRWMGSARIDFYVC 554


>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
           Pfam profile PF00004: ATPase, AAA family
          Length = 1122

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 295 YIHINILWYWEGIGLDITALAISSTASLRTCAFSCRSKYMKLP 167
           ++H+++  Y+   G +ITAL      SLR    S  +K  KLP
Sbjct: 391 FLHLHLFVYFPDYGYEITALTAKEVESLRDGLAS--NKSCKLP 431


>At1g52830.1 68414.m05973 auxin-responsive protein / indoleacetic
           acid-induced protein 6 (IAA6) nearly identical to
           SP|Q38824 Auxin-responsive protein IAA6 (Indoleacetic
           acid-induced protein 6) {Arabidopsis thaliana}
          Length = 189

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -3

Query: 163 KLLITSPGENFSKHSVSTSHIKSTRCLSKMLKHWSILDNPTSRIVSEI 20
           +L +  PG+N+S+ SV  S  K  R LS M+   ++     + +VS +
Sbjct: 12  ELRLGLPGDNYSEISVCGSSKKKKRVLSDMMTSSALDTENENSVVSSV 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,046,716
Number of Sequences: 28952
Number of extensions: 299021
Number of successful extensions: 690
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)