Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40319
         (775 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2BXX4 Cluster: Putative inner membrane protein; n=1; P...    35   2.0  
UniRef50_Q2BH49 Cluster: Putative uncharacterized protein; n=1; ...    35   2.6  
UniRef50_Q1WV20 Cluster: Hypothetical secreted protein; n=1; Lac...    33   6.0  
UniRef50_Q86B02 Cluster: Similar to Dictyostelium discoideum (Sl...    33   6.0  
UniRef50_Q54TJ5 Cluster: Putative uncharacterized protein; n=1; ...    33   6.0  
UniRef50_Q7RNR7 Cluster: RNA recognition motif, putative; n=6; P...    33   7.9  

>UniRef50_Q2BXX4 Cluster: Putative inner membrane protein; n=1;
           Photobacterium sp. SKA34|Rep: Putative inner membrane
           protein - Photobacterium sp. SKA34
          Length = 336

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
 Frame = -1

Query: 283 QKRWNKHEHIVSSQ-QSSFSGE*LDAE---KLSTNKIKSHITSVIQIQEKD*GGMKTDNN 116
           +K+  +HE IV+ Q +++   + ++ E   K   N I   + + IQ+Q K      TDN 
Sbjct: 161 EKKVLRHEWIVNYQVENNIISQTIENEDEFKALVNLIGCQLVADIQVQSKQTSTFSTDN- 219

Query: 115 VIGNRPSKLCLLTSGVFYIFES--PREAV*FIDAY 17
                PS +CLL + + YIF +   RE   +I+ Y
Sbjct: 220 -----PSDICLLVADLIYIFSALKLREIKMYINEY 249


>UniRef50_Q2BH49 Cluster: Putative uncharacterized protein; n=1;
           Neptuniibacter caesariensis|Rep: Putative
           uncharacterized protein - Neptuniibacter caesariensis
          Length = 251

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 742 LAGFGFFNYHDVIPSPWKSIVNHLLSKYFIGKI 644
           ++GFG F     + S W+ IVNHL+S  F+ K+
Sbjct: 216 MSGFGVFCSDSSLSSDWQLIVNHLVSSLFLQKV 248


>UniRef50_Q1WV20 Cluster: Hypothetical secreted protein; n=1;
           Lactobacillus salivarius subsp. salivarius UCC118|Rep:
           Hypothetical secreted protein - Lactobacillus salivarius
           subsp. salivarius (strain UCC118)
          Length = 593

 Score = 33.5 bits (73), Expect = 6.0
 Identities = 17/73 (23%), Positives = 34/73 (46%)
 Frame = -1

Query: 340 YTEFNSISVRKP*ASDSDWQKRWNKHEHIVSSQQSSFSGE*LDAEKLSTNKIKSHITSVI 161
           Y + N+I V  P  +   W K      ++V    S+FSG+ + +  +   KI+ +  + +
Sbjct: 113 YKDSNNIHVMIPMIAYKSWNKSTKTKYYVVMQSGSTFSGQEISSSNVIRTKIEDYSRTAL 172

Query: 160 QIQEKD*GGMKTD 122
            + +   G +K D
Sbjct: 173 WMLDVTVGNIKAD 185


>UniRef50_Q86B02 Cluster: Similar to Dictyostelium discoideum (Slime
            mold). Nucleotide exchange factor RasGEF P; n=3;
            Eukaryota|Rep: Similar to Dictyostelium discoideum (Slime
            mold). Nucleotide exchange factor RasGEF P -
            Dictyostelium discoideum (Slime mold)
          Length = 2454

 Score = 33.5 bits (73), Expect = 6.0
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
 Frame = -1

Query: 520  SSLQIILFHNLNSI*TAFSRHSSLENSKSKDTKHTKKILA----WNTSKCKCEHFIT-TL 356
            SS++I+  +N N+I    + +S+   SK +  +   + +     WN  KCK  HF+T  +
Sbjct: 2367 SSIEIVYNNNSNNINNNNNNNSNNSKSKQQQQQQQNQNIQQNNDWNLFKCKFCHFLTCAI 2426

Query: 355  STFTSYTEFNSISV 314
            S  TS    N I+V
Sbjct: 2427 SKSTSGVNENLIAV 2440


>UniRef50_Q54TJ5 Cluster: Putative uncharacterized protein; n=1;
            Dictyostelium discoideum AX4|Rep: Putative
            uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1267

 Score = 33.5 bits (73), Expect = 6.0
 Identities = 36/172 (20%), Positives = 73/172 (42%), Gaps = 3/172 (1%)
 Frame = -1

Query: 541  TKHKNMHSSLQIILFHNLNSI*TAFSRHSSLENSK-SKDTKHTKKILAWNTSKCKCEHFI 365
            +K K+  ++  I   +  +S+  +  ++SS EN   +++       L+ N+S       I
Sbjct: 609  SKQKSPSTTSPIKRSNTFDSV-ESIKKNSSKENKGINQNVDLLSLFLSTNSSSTSSSLSI 667

Query: 364  TTLSTFTSYTEFNSISVRKP*ASDSDWQKRWNKHEHIVSSQQSSFSGE*LDAEKLSTNKI 185
            TT S+ +  TEFN I+      + ++W+  + K +H  +S  S  +         + N  
Sbjct: 668  TTSSSSSLSTEFNEINNCSDEDNKNEWKPLFLKKKHKSNSNSSKITSPNSSINNSNNNNN 727

Query: 184  KSHITSVIQIQEKD*GGMKTDNNVIGN-RPSKLCLLTS-GVFYIFESPREAV 35
             ++  +       +      +NN+I N R  K   L S  + Y+F   +  +
Sbjct: 728  NNNNNNNNNNNNNNNNNNNINNNIILNQREIKAINLASCFILYVFSGQQNNI 779


>UniRef50_Q7RNR7 Cluster: RNA recognition motif, putative; n=6;
            Plasmodium (Vinckeia)|Rep: RNA recognition motif,
            putative - Plasmodium yoelii yoelii
          Length = 1312

 Score = 33.1 bits (72), Expect = 7.9
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = -1

Query: 550  NN*TKHKNMHSSLQIILF-HNLNSI*TAFSRHSSLENSKSKDTKHTKKILAWNTSKCKCE 374
            NN  KH N HS +    + +N  S     +++ S  +S  K TK   KI     S+ K E
Sbjct: 1217 NNGNKHHNFHSKINNYSYSNNYKSSNYYNNKYPSKNSSYYKSTKGQLKINEKEKSESKSE 1276

Query: 373  HFITTLSTFTSYTEFNSISVRK 308
              +       S  + N++S++K
Sbjct: 1277 IQVIPKKAIVSTVKTNNVSIKK 1298


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 755,952,304
Number of Sequences: 1657284
Number of extensions: 14999730
Number of successful extensions: 31605
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31589
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65027411410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)