Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40319
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    27   3.9  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    26   5.2  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   6.9  

>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 561 HRMLTIKPSTKICIP 517
           HRML + PST+I IP
Sbjct: 236 HRMLDVNPSTRITIP 250


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -1

Query: 727 FFNYHDVIPSPWKSIVNHLLSKYFIGKIGTRCGIRTPVHRYI 602
           F  YH  I   W SIVNH   +    K GT    R P  +Y+
Sbjct: 294 FVRYHPSITPKWLSIVNHPFVEQL--KAGTLS--RLPFQKYL 331


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 529 NMHSSLQIILFHNLNSI*TAFSRHSSLENSK--SKDTKHTKKILAW 398
           N H+ L + LF+  N I  AFS  ++  +SK  S+D    + +  W
Sbjct: 416 NSHTGLILALFYLTNLIALAFSFRAAATHSKLSSEDLSSIEIVFIW 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,296,553
Number of Sequences: 5004
Number of extensions: 69866
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)