Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40319
         (775 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31652| Best HMM Match : Peptidase_C2 (HMM E-Value=0)                32   0.45 
SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.78 
SB_3535| Best HMM Match : WD40 (HMM E-Value=3.2)                       31   1.0  
SB_35831| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  

>SB_31652| Best HMM Match : Peptidase_C2 (HMM E-Value=0)
          Length = 1133

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -1

Query: 373 HFITTLSTFTSYTEFNSISVRKP*ASDSDWQKRWNKHE---HIVSSQQ 239
           HF  TLS+     E + I +R P A+ S+W+  W+      +++SSQ+
Sbjct: 274 HFQATLSSLRGRPEVDLIRLRNPHANSSEWRGAWSDRSPEWNMLSSQE 321


>SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1880

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = -1

Query: 517  SLQIILFHNLNSI*TAFSRHSSLENSKSKDTKHTKKILAWNTSKCKCEHFITTLSTFTSY 338
            +L ++ FHN+ SI T+F    S  NS    T+   + L  +++     HF  T S  +S+
Sbjct: 1782 TLSVLPFHNIASIDTSFEEMDS--NSAYDSTQLISETLKEHSNNLSIMHF-NTHSMLSSF 1838

Query: 337  TEFNSISVRKP 305
             EF  +  + P
Sbjct: 1839 NEFQVLVSQLP 1849


>SB_3535| Best HMM Match : WD40 (HMM E-Value=3.2)
          Length = 231

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 748 IILAGFGFFNYHDVIPSPWKSIVNHLLSKYFIGKIGTRCGIR 623
           ++L+GF   N   V+  PW   V +L    +  + G+ CGIR
Sbjct: 137 LLLSGFNGDNSLVVVERPWMDTVQNLPPALYRKRYGSNCGIR 178


>SB_35831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 647

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 532 CAWFNC*HTMRRRGLKDKTSGAFVCSDAPVFESRSGYQ 645
           C   +C H M  + + D+  GAF+    PV+ +R G+Q
Sbjct: 530 CIAIHCRHIMAAKRMSDEELGAFL---RPVYYARGGFQ 564


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,925,719
Number of Sequences: 59808
Number of extensions: 486389
Number of successful extensions: 1015
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)