Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40319
         (775 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03390.1 68417.m00461 leucine-rich repeat transmembrane prote...    30   2.0  
At5g45120.1 68418.m05539 aspartyl protease family protein contai...    29   3.4  
At5g61900.3 68418.m07767 copine BONZAI1 (BON1) nearly identical ...    29   4.5  
At5g61900.1 68418.m07766 copine BONZAI1 (BON1) nearly identical ...    29   4.5  
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa...    28   7.9  
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa...    28   7.9  
At1g79760.1 68414.m09306 expressed protein                             28   7.9  

>At4g03390.1 68417.m00461 leucine-rich repeat transmembrane protein
           kinase, putative similar to Z. mays leucine-rich repeat
           transmembrane protein kinase LRRTPK 1, GenBank accession
           number AF023164
          Length = 776

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = -1

Query: 466 SRHSSLENSKSKDTKHTKKIL 404
           S  SS ENSK K++ HTKKI+
Sbjct: 298 SEGSSSENSKGKNSSHTKKII 318


>At5g45120.1 68418.m05539 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 491

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/69 (33%), Positives = 33/69 (47%)
 Frame = +3

Query: 24  SINQTASLGDSNI*NTPLVSKHNFDGLFPITLLSVFIPPQSFSCIWMTDVM*LLILLVDS 203
           SIN T SL  + + NTP+     + GL  IT+ +   P Q    +   D      +LVDS
Sbjct: 280 SINLTDSLQFTPMLNTPMYPNSYYIGLESITIGTNITPTQVPLTLRQFDSQGNGGMLVDS 339

Query: 204 FSASSHSPE 230
            +  +H PE
Sbjct: 340 GTTYTHLPE 348


>At5g61900.3 68418.m07767 copine BONZAI1 (BON1) nearly identical to
           BONZAI1 [Arabidopsis thaliana] GI:15487382; contains
           Pfam profile PF00168: C2 domain
          Length = 578

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +3

Query: 309 FLTEILLNSV*DVNVLRVVIKCSHLHFEVFQARIFLVCLVSFDFEFSRDECLE 467
           F +E++LNS+    + + ++     HFE  Q  +F V  V   F+ SR+E L+
Sbjct: 87  FRSEVVLNSLAPKWIKKFIVA---YHFETVQTLVFRVYDVDTKFQNSREEMLK 136


>At5g61900.1 68418.m07766 copine BONZAI1 (BON1) nearly identical to
           BONZAI1 [Arabidopsis thaliana] GI:15487382; contains
           Pfam profile PF00168: C2 domain
          Length = 578

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +3

Query: 309 FLTEILLNSV*DVNVLRVVIKCSHLHFEVFQARIFLVCLVSFDFEFSRDECLE 467
           F +E++LNS+    + + ++     HFE  Q  +F V  V   F+ SR+E L+
Sbjct: 87  FRSEVVLNSLAPKWIKKFIVA---YHFETVQTLVFRVYDVDTKFQNSREEMLK 136


>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
           domain PF00929: exonuclease
          Length = 344

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -2

Query: 621 HRCIATYECTGR---LIL*ATTSHRMLTIKPSTKICIPHCR*FYSI 493
           HRC+A Y+   R   L+     S+  L  +P   +C+ HC+ F S+
Sbjct: 17  HRCVACYKMFNRREHLVEHMKISYHSLH-QPRCGVCLKHCKSFESV 61


>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
           domain PF00929: exonuclease
          Length = 344

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -2

Query: 621 HRCIATYECTGR---LIL*ATTSHRMLTIKPSTKICIPHCR*FYSI 493
           HRC+A Y+   R   L+     S+  L  +P   +C+ HC+ F S+
Sbjct: 17  HRCVACYKMFNRREHLVEHMKISYHSLH-QPRCGVCLKHCKSFESV 61


>At1g79760.1 68414.m09306 expressed protein
          Length = 299

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 502 LFHNLNSI*TAFSRHSSLENSKSKDTKHTKK 410
           L HNL SI   ++  ++L N+  K TK TKK
Sbjct: 245 LHHNLISISFLYTSTTTLHNTSRKITKRTKK 275


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,709,639
Number of Sequences: 28952
Number of extensions: 347087
Number of successful extensions: 713
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)