Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40318
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   4.9  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   4.9  

>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = -1

Query: 280 VLVSFVSELYRHLQKFICEIYIFYKISFLHIIMFSINLDVYLTSRKGRKLKFYNLTKLSL 101
           ++V ++SEL +        ++  YK+       F + +   L    GR L  Y  TKL +
Sbjct: 541 LIVRYISELTKFQLMPFHMVFECYKLCINEFTPFDLEVLALLLESCGRFLLRYPETKLQM 600

Query: 100 HRLLE 86
              LE
Sbjct: 601 QSFLE 605


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -2

Query: 609 NAINAYLIIDKRFKGHRTLVHRHQNIHIILLLDDMKRSIFIMTFNKKKSN 460
           N +N    + KR K +  LV   +N++   LL+   R +F++ +NK KSN
Sbjct: 212 NVLNKLDDLSKRSKNYPNLVI-DRNLYKDFLLN---RDMFLIAYNKLKSN 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,203,629
Number of Sequences: 5004
Number of extensions: 44058
Number of successful extensions: 118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)