Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40318
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0050 + 19631164-19631987,19632103-19634023                       29   2.9  
12_01_0427 + 3359766-3360092,3360425-3360541,3360738-3360893,336...    28   6.7  
09_04_0603 - 18895998-18896392,18896491-18896617                       28   6.7  
01_06_0906 + 32886693-32886919,32887589-32887708,32887978-328881...    28   6.7  

>11_06_0050 + 19631164-19631987,19632103-19634023
          Length = 914

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 349 KMLCQIHLAHIGILVLCVLSKCKYLPLLPPYVPFTKNITF 468
           K L  I L H+  L +C       LP LP   PF + + F
Sbjct: 542 KQLATISLCHLRSLTVCGQGLSSLLPTLPSMCPFLRVLDF 581


>12_01_0427 +
           3359766-3360092,3360425-3360541,3360738-3360893,
           3361009-3361144,3361303-3361436,3361832-3361987,
           3362496-3362594,3362817-3362932,3363358-3363532,
           3363807-3363885,3363989-3364132,3364206-3364319,
           3364415-3364536,3364929-3365011,3365091-3365188,
           3365300-3365420,3366237-3366333,3366782-3366874,
           3366948-3367053,3367395-3367540,3367617-3367697,
           3367838-3367921,3367997-3368132,3368334-3368400,
           3368943-3369102
          Length = 1048

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -3

Query: 455 FVNGTYGGKSGKYLHLLKTHKTNIPICAKCIWQSILNYSTRKV 327
           F+N  Y  K   YLH+++    + P+  K  W + L+ + + +
Sbjct: 156 FLNHRYHAKRCLYLHVIEKSLRSSPLIQKISWSTFLDEARKPI 198


>09_04_0603 - 18895998-18896392,18896491-18896617
          Length = 173

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 440 YGGKSGKYLHLLKTHKTNIPICAKCIWQSILNY 342
           +GGK    L  LK H  N+ I A C++   L +
Sbjct: 93  HGGKMAAILEFLKKHSLNLLILALCLFVGALAF 125


>01_06_0906 +
           32886693-32886919,32887589-32887708,32887978-32888101,
           32888224-32888361,32888492-32888701,32889085-32889232,
           32890452-32890801,32890909-32890963,32891087-32891382,
           32891480-32891531,32891740-32891947,32892064-32892446,
           32894102-32894538,32895452-32895643
          Length = 979

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 385 ILVLCVLSKCKYLPLLP 435
           +L +C+LS C YLP LP
Sbjct: 238 LLEMCILSGCDYLPSLP 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,956,484
Number of Sequences: 37544
Number of extensions: 209759
Number of successful extensions: 415
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)