Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40318
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)         29   3.9  
SB_52287| Best HMM Match : Myb_DNA-binding (HMM E-Value=4.5)           27   9.1  

>SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)
          Length = 1907

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 376 VLNVFGKAF*IIVREKFDQSRSKPERYVH*CFVLVSFVSELYRH 245
           +++V G+   ++  +K DQ R + +R       L SFV  LYRH
Sbjct: 442 LVHVMGRKDEVVSSQKHDQLRQQLQRTSDRQLSLYSFVMSLYRH 485


>SB_52287| Best HMM Match : Myb_DNA-binding (HMM E-Value=4.5)
          Length = 529

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 406 SKCKYLPLLPPYVPFTKNITFFFIKCH 486
           ++C  + LLP   P T N+ F  + CH
Sbjct: 141 NECTLVCLLPAAQPLTYNVRFTLVHCH 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,011,456
Number of Sequences: 59808
Number of extensions: 278646
Number of successful extensions: 615
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)