Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40317
(701 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 51 2e-07
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 33 0.030
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 29 0.49
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 26 4.5
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 26 4.5
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom... 26 6.0
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.0
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 26 6.0
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 7.9
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 25 7.9
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha... 25 7.9
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 50.8 bits (116), Expect = 2e-07
Identities = 27/88 (30%), Positives = 51/88 (57%)
Frame = +3
Query: 258 VQMGQSKYAHHSVKRILKYGTDFIRHEVLKKFYGHVVSLSTHAISAPVLDYAYGEFASKK 437
V + +S Y + +I KYGT ++ +L + YG+VV + H +A V++ A+ EF + +
Sbjct: 203 VDLCKSPYGKYLAIKIFKYGTPKMKEVILGEMYGNVVKMIRHREAAYVVEDAFREFTNLQ 262
Query: 438 EKCHMQQEFYGEIYKNTKDDKVKTSEMH 521
++ + EFYG ++ KD +T ++H
Sbjct: 263 QQRALICEFYGPEFQVFKD---RTQDIH 287
Score = 38.3 bits (85), Expect = 0.001
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +1
Query: 1 VRRKAKITAEVFEISHKAKLLAAQIQRKV-VKSDFRTNSCKELHNMLKGQYKSIALTHDL 177
++++ K + S KAK L ++++K +K++ R EL ++++ K + HD+
Sbjct: 116 LQKERKAMKPFADTSLKAKSLWDKLRQKTSIKAEERKTIIAELFDLIRTNVKQLVFKHDM 175
Query: 178 SRVIQVLLKHSPEDIINEITKEL 246
SRV+Q +K + I EL
Sbjct: 176 SRVVQTCVKFGSKQQRETICAEL 198
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 33.5 bits (73), Expect = 0.030
Identities = 20/80 (25%), Positives = 39/80 (48%)
Frame = +3
Query: 237 ERASRHIVQMGQSKYAHHSVKRILKYGTDFIRHEVLKKFYGHVVSLSTHAISAPVLDYAY 416
E AS +Q+ + ++ V++ ++G + + +L + GHV SLS V+ A
Sbjct: 432 EIASTSCLQLMMDIFGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAI 491
Query: 417 GEFASKKEKCHMQQEFYGEI 476
E+ S + + + QE G +
Sbjct: 492 -EYISPEHQVQLIQELDGHV 510
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 29.5 bits (63), Expect = 0.49
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 115 CKELHNMLKGQYKSIALTHDLSRVIQVLLKHSPEDIINEITKELL 249
CKE ++ GQ + IAL L R ++L+ P ++ ITK L+
Sbjct: 566 CKEA-SLSGGQQQRIALARALLRDTEILILDEPTSALDPITKNLV 609
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 295 LSEY*NMEQISLGMRF*RSFMD--MLYPCQLMLLVHLSWIMHMG 420
LSE+ N + + RS+ + +PC +M LV + W++ +G
Sbjct: 2 LSEFENGAPVQQFVSRFRSYSSKFLFFPCLIMSLVFMQWLISIG 45
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 291 SVKRILKYGTDFIRHEVLKKFYGHVVSLSTHAISAPVLDYAYGEFASK 434
++K IL T + + K ++G+ L H + P+ DY +FA K
Sbjct: 728 NLKVILMSAT--VNSDTFKYYFGNAGHLHIHGRTFPIKDYYIEDFAPK 773
>SPCC330.10 |pcm1||mRNA capping
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 389
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +3
Query: 489 KDDKVKTSEMHTKTVQK*NRLYSRPVSKLTEDIRQKP 599
+D S +H + NR Y+RP +++ I Q+P
Sbjct: 28 RDMSSSNSRVHEEQPPTENRRYARPTAQMNRVIEQQP 64
>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +3
Query: 354 YGHVVSLSTHAISAPVLDYAYGEFASK---KEKCHMQQEFYGEIYKNTKDDKV 503
YG + + +S L Y +GE AS+ EKC Q + +K+ + V
Sbjct: 96 YGETLLYIANGLSLATLKYKFGEDASETYASEKCTSHQLSDSDFFKSLQTSAV 148
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = -3
Query: 486 YSYKSLHRILVACGIFPFSKQTPHMHNPRQ 397
Y + +L R++V+ ++ PH H P++
Sbjct: 325 YEFSNLRRLMVSESLYSSKSLWPHSHKPQR 354
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.4 bits (53), Expect = 7.9
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 13/85 (15%)
Frame = +3
Query: 312 YGTDFIRHEVLKKFYGHVVSLSTHAISA-----------PVLDYAYGEFASKKEKCHMQQ 458
Y DF+RH++ K G V H S+ PV +S+K
Sbjct: 126 YTYDFLRHQIEFKRIGLVPITVPHGFSSDRSITSKSSHKPVNVIVRNRASSRKPPLTSTH 185
Query: 459 EF--YGEIYKNTKDDKVKTSEMHTK 527
F YG + ++ DD+ T + H+K
Sbjct: 186 RFRRYGAVISDSDDDESNTEQDHSK 210
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/51 (21%), Positives = 28/51 (54%)
Frame = +1
Query: 97 DFRTNSCKELHNMLKGQYKSIALTHDLSRVIQVLLKHSPEDIINEITKELL 249
++ N ++N L+G++ +A+ + S V+Q + ++ E E +E++
Sbjct: 497 EYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNMFENCVEKDKRECIEEII 547
>SPAC1142.06 |get3||GET complex ATPase subunit Get3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 95 DFTTFLCICAANNLALCE 42
D TTF+C+C + L+L E
Sbjct: 220 DLTTFVCVCISEFLSLYE 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,712
Number of Sequences: 5004
Number of extensions: 61155
Number of successful extensions: 165
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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