Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40317
(701 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0858 + 23740589-23743233,23743362-23743503,23744778-237449... 44 9e-05
04_03_0138 + 11710595-11711271,11711533-11711665,11711819-117119... 38 0.008
03_06_0555 - 34693067-34693196,34693450-34693688,34693956-346940... 38 0.008
05_03_0525 + 15002846-15003048,15004814-15004937,15005458-150054... 37 0.018
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 32 0.38
07_03_1050 - 23570785-23570824,23570938-23571004,23571114-235711... 31 1.2
02_05_1240 + 35181983-35182615,35183025-35183856,35183936-351844... 31 1.2
01_06_1320 + 36272716-36273339,36274222-36275762,36276349-362764... 29 2.7
08_02_0955 + 22994266-22995630 29 3.6
05_01_0072 - 486211-486254,486350-486524,486658-486852,487489-48... 29 4.7
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721... 28 6.2
10_08_0681 + 19855134-19855454 28 8.3
09_04_0609 - 18929600-18929646,18929753-18929924,18930304-189304... 28 8.3
04_01_0522 - 6865049-6865131,6865214-6865388,6865692-6865877,686... 28 8.3
>12_02_0858 + 23740589-23743233,23743362-23743503,23744778-23744990,
23745083-23745190,23745378-23745587,23745881-23746055,
23746197-23746264
Length = 1186
Score = 44.4 bits (100), Expect = 9e-05
Identities = 31/115 (26%), Positives = 56/115 (48%)
Frame = +3
Query: 237 ERASRHIVQMGQSKYAHHSVKRILKYGTDFIRHEVLKKFYGHVVSLSTHAISAPVLDYAY 416
E + M + +YA++ V+ IL++G +R ++KKF G VV++S ++ V++
Sbjct: 1016 EEIIEEVYYMAKDQYANYVVQNILQHGKALVRSAIIKKFIGRVVAMSKQKFASNVIEKCL 1075
Query: 417 GEFASKKEKCHMQQEFYGEIYKNTKDDKVKTSEMHTKTVQK*NRLYSRPVSKLTE 581
F S EK Q+ E+ T D V++ E V ++ + V K+ E
Sbjct: 1076 -IFGSYDEK----QKIINEVIGTT--DLVRSGETEALVVMVNDQYANYVVQKVIE 1123
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +3
Query: 282 AHHSVKRILKYGTDFIRHEVLKKFYGHVVSLSTHAISAPVLDYAYGEFASKKEKCHMQQE 461
A+H V++ +++ ++ YG VV LS H V+ F S ++ + +E
Sbjct: 959 ANHVVQKCIEHVPPRFIQFFVESMYGRVVELSVHPYGCRVIQRILEYFDSSIQEIFL-EE 1017
Query: 462 FYGEIYKNTKD 494
E+Y KD
Sbjct: 1018 IIEEVYYMAKD 1028
>04_03_0138 +
11710595-11711271,11711533-11711665,11711819-11711926,
11712307-11712354,11713191-11713250
Length = 341
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +3
Query: 303 ILKYGTDFIRHEVLKKFYGHVVSLSTHAISAPVLDYAYGEFASKKEKCHMQQE 461
+L YG F R E++ K GHVV+LS H V+ A+ E + ++ M E
Sbjct: 271 LLGYGPTFYRRELIGKLTGHVVALSLHVYGCRVMQKAF-EVSDMDQRIEMANE 322
>03_06_0555 -
34693067-34693196,34693450-34693688,34693956-34694033,
34694057-34694131,34694667-34694831,34695101-34695151,
34695250-34695300,34695462-34695533,34695736-34695948,
34696064-34696214,34696376-34696490,34696665-34696748,
34696841-34696964,34697064-34697145,34697238-34697299,
34697787-34697840,34697944-34698147
Length = 649
Score = 37.9 bits (84), Expect = 0.008
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +3
Query: 255 IVQMGQSKYAHHSVKRILKYGTDFIRHEVLKKFYGHVVSLSTHAISAPVLDYAYGEFASK 434
++ + KYA VK+++K T + +G V L H I A V+D+AY + A+
Sbjct: 156 LLTLSLKKYAVFLVKKLIKRATKKQFEWFISSLHGRVAKLLRHTIGASVVDFAY-QLATP 214
Query: 435 KEKCHMQQEFY 467
+K + E Y
Sbjct: 215 PQKRRLLLELY 225
>05_03_0525 +
15002846-15003048,15004814-15004937,15005458-15005481,
15005995-15006779,15006839-15006873,15007108-15007601,
15007951-15008452,15008725-15008867,15009523-15009576,
15010255-15010362,15010529-15010705,15011169-15011186,
15011561-15011938,15012125-15012310,15012356-15013205,
15013362-15013402,15013491-15013868,15014195-15014236,
15014528-15014678,15015621-15015670
Length = 1580
Score = 36.7 bits (81), Expect = 0.018
Identities = 16/57 (28%), Positives = 33/57 (57%)
Frame = +3
Query: 237 ERASRHIVQMGQSKYAHHSVKRILKYGTDFIRHEVLKKFYGHVVSLSTHAISAPVLD 407
E + M + +YA++ V+ IL++G +R ++K+F G VV++S ++ V +
Sbjct: 804 EEIIEDVYYMTKEQYANNVVQHILQHGKALVRSLIIKRFIGKVVTMSKQKYASNVFE 860
>08_02_1277 + 25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 32.3 bits (70), Expect = 0.38
Identities = 18/81 (22%), Positives = 36/81 (44%)
Frame = +3
Query: 252 HIVQMGQSKYAHHSVKRILKYGTDFIRHEVLKKFYGHVVSLSTHAISAPVLDYAYGEFAS 431
H + + ++ +++ ++GT R ++ K GHV+ LS V+ A E
Sbjct: 1510 HASSLMTDVFGNYVIQKFFEHGTPEQRRDLATKLVGHVLPLSLQMYGCRVIQKAL-EVME 1568
Query: 432 KKEKCHMQQEFYGEIYKNTKD 494
+K + +E G I + +D
Sbjct: 1569 LDQKIELVRELDGNIMRCVRD 1589
>07_03_1050 -
23570785-23570824,23570938-23571004,23571114-23571196,
23572028-23572201,23572268-23572471,23572570-23573300
Length = 432
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -3
Query: 507 SSPCHLLYSYKSLHRILVACGIFPFSKQTPHMHNPRQVH 391
S PCH + ++ + V C F S P +HNPRQVH
Sbjct: 135 SKPCHFHF-FRGYCKKGVNCQFFHGS--VPELHNPRQVH 170
>02_05_1240 +
35181983-35182615,35183025-35183856,35183936-35184497,
35184581-35184722,35184832-35184939,35185055-35185267,
35185355-35185465,35185684-35185878,35186094-35186268,
35186379-35186413
Length = 1001
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +3
Query: 339 VLKKFYGHVVSLSTHAISAPVLDYAYGEFASKKEKCHMQQEFYGEIYKNTKD 494
++ FYGHVV LSTH V+ + + M +E + T D
Sbjct: 808 IISAFYGHVVELSTHPYGCRVIQRVLEHCNDENTQSTMMEEIMQSVVLLTLD 859
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/72 (22%), Positives = 34/72 (47%)
Frame = +3
Query: 279 YAHHSVKRILKYGTDFIRHEVLKKFYGHVVSLSTHAISAPVLDYAYGEFASKKEKCHMQQ 458
+ ++ +++ +YGT+ + ++ G+V+ LS V+ A E +++ M
Sbjct: 716 FGNYVIQKFFEYGTEPQKKQLASLLKGYVLQLSLQMYGCRVIQKAL-EMVEVEQQTQMAL 774
Query: 459 EFYGEIYKNTKD 494
E G I K +D
Sbjct: 775 ELDGNIMKCVRD 786
>01_06_1320 +
36272716-36273339,36274222-36275762,36276349-36276490,
36276622-36276729,36276814-36277026,36277113-36277223,
36278056-36278250,36278874-36279048,36279189-36279226
Length = 1048
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +3
Query: 252 HIVQMGQSKYAHHSVKRILKYGTDFIRHEVLKKFYGHVVSLSTHAISAPVL 404
HI++ + + +H +++ ++ + ++ FYG VV LSTH V+
Sbjct: 825 HIMRCVRDQNGNHVIQKCIECVPEDSIQFIISTFYGQVVPLSTHPYGCRVI 875
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +3
Query: 237 ERASRHIVQMGQSKYAHHSVKRILKYGTDFIRHEVLKKFYGHVVSLSTHAISAPVLDYAY 416
E+ + I+QM Q K+A + V++ L +G R ++ + G + + A + D +
Sbjct: 929 EKLAGQIIQMSQQKFASNVVEKCLTFGGPAEREVLINEMLG--TTDENEPLQAMMKD-QF 985
Query: 417 GEFASKK--EKCHMQQ 458
G + +K E C QQ
Sbjct: 986 GNYVVQKVLETCDDQQ 1001
>08_02_0955 + 22994266-22995630
Length = 454
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 121 ELHNMLKGQYKSIALTHDLSRVIQVLLKHSPEDIINEITK 240
+LHNM++GQ A T LS ++ LKH I+ +TK
Sbjct: 224 KLHNMIRGQLSVKASTTQLSDKVR-RLKHKYNLILTRVTK 262
>05_01_0072 -
486211-486254,486350-486524,486658-486852,487489-487599,
487693-487905,488432-488539,488621-488762,489157-490418,
490460-490480,490842-491228
Length = 885
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = +3
Query: 252 HIVQMGQSKYAHHSVKRILKYGTDFIRHEVLKKFYGHVVSLSTHAISAPVL 404
H+++ + + +H +++ ++ ++ FYG VV LSTH V+
Sbjct: 660 HVMRCVRDQNGNHVIQKCIECIPQHAIQFIVSTFYGQVVMLSTHPYGCRVI 710
>12_02_0134 -
14071190-14071435,14071800-14071988,14072114-14072194,
14072261-14072404,14072528-14072761,14072836-14073981,
14074863-14074922,14075178-14075420,14075509-14075607,
14076196-14076367,14076597-14076735,14077514-14077624,
14077695-14077797,14077885-14077962,14078054-14078122,
14078203-14078275,14078891-14078975,14079473-14079536,
14079963-14080073,14080139-14080213,14080306-14080398,
14080982-14081056,14081172-14081261
Length = 1259
Score = 28.3 bits (60), Expect = 6.2
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Frame = +3
Query: 258 VQMGQSKYAHHSV--KRILKYG-TDFIRHEVLKKFYGHVVSLSTHAISAPVLDYAYGEFA 428
V MG+ KY +V K ILK+G TD H + ++ ++ H ++D F
Sbjct: 20 VYMGRRKYTRQTVAMKFILKHGKTDKDIHNLRQEI--EILRKLKHENIIEMID----SFE 73
Query: 429 SKKEKCHMQQEFYGEIYKNTKDDKVKTSE 515
+ +E C + + GE+++ +DDK E
Sbjct: 74 TPQEFCVVTEFAQGELFEVLEDDKCLPEE 102
>10_08_0681 + 19855134-19855454
Length = 106
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -3
Query: 540 ISGLSLYASLRSSPCHLLYSYKSLHRILVACGIFPFSKQTPHMHNPRQV 394
+ G L A+ +++ ++LH I CG +Q PH+H+P V
Sbjct: 42 VRGARLAAARPCEEIYVVEEGETLHSISDRCGDPYILEQNPHVHDPDDV 90
>09_04_0609 -
18929600-18929646,18929753-18929924,18930304-18930498,
18930691-18930801,18930885-18931097,18931643-18931720,
18931894-18932001,18932175-18932316,18932413-18933761,
18934492-18935121
Length = 1014
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/61 (21%), Positives = 28/61 (45%)
Frame = +3
Query: 252 HIVQMGQSKYAHHSVKRILKYGTDFIRHEVLKKFYGHVVSLSTHAISAPVLDYAYGEFAS 431
H +++ + ++ +++ + G+ + E+ K GHV SLS V+ + S
Sbjct: 691 HALELMTDVFGNYVIQKFFEKGSPQQKREIANKLAGHVFSLSLQMYGCRVIQKLAKYYLS 750
Query: 432 K 434
K
Sbjct: 751 K 751
>04_01_0522 -
6865049-6865131,6865214-6865388,6865692-6865877,
6866489-6866599,6866678-6866890,6867446-6867553,
6867632-6867773,6867855-6868951,6871287-6871559
Length = 795
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 237 ERASRHIVQMGQSKYAHHSVKRILKYGTDFIRHEVLKK 350
++ S +V + Q KYA + V++ L +GT R ++++
Sbjct: 664 QKLSGQVVNLSQQKYASNVVEKCLSFGTPDEREGLIRE 701
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,960,526
Number of Sequences: 37544
Number of extensions: 338349
Number of successful extensions: 827
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -