Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40317
(701 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19246| Best HMM Match : CPL (HMM E-Value=5.99994e-41) 30 2.1
SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28) 29 2.8
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0) 29 2.8
SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08) 29 2.8
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_10683| Best HMM Match : Stathmin (HMM E-Value=0.0011) 29 2.8
SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_2049| Best HMM Match : Ribosomal_LX (HMM E-Value=0.98) 29 3.6
SB_24457| Best HMM Match : TPR_2 (HMM E-Value=1.4e-16) 29 4.8
SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2) 29 4.8
SB_23011| Best HMM Match : Mo-nitro_C (HMM E-Value=1.4) 29 4.8
SB_47092| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_19246| Best HMM Match : CPL (HMM E-Value=5.99994e-41)
Length = 506
Score = 29.9 bits (64), Expect = 2.1
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Frame = +3
Query: 336 EVLKKFYGHVVSLSTHAISAPVLDYAYGEFASKKEKCHMQQEFYGEIYKNTKD-DKVKTS 512
++LK GH TH ++ +++ Y ++A +K + QEFYG + K D +
Sbjct: 147 DILKLIAGH-----THEEASEIMEAIYTDYAVAAQKASLIQEFYGPEFAVFKTLDNRNLA 201
Query: 513 EMHTKTVQK*NRLYSRPVSKLTEDIRQKPT*WRIVHSVLYDYI 641
++ + +K + + L + IVH VL +Y+
Sbjct: 202 KILAEQPEKKDEILRNLKEALGPLTDKSVITHNIVHRVLSEYM 244
>SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)
Length = 419
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +3
Query: 345 KKFYGHVVSLSTHAISAPVLDYAYGEFASKKEKCHMQQEFYGEIYKNTKDDKV 503
KKF+ HV T + P L F S K+K +++ ++ T DD V
Sbjct: 94 KKFWSHVKHSRTESRGIPTLRQGNSMFISDKDKAEALNKYFESVF--TMDDGV 144
>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 2322
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/82 (23%), Positives = 35/82 (42%)
Frame = +3
Query: 420 EFASKKEKCHMQQEFYGEIYKNTKDDKVKTSEMHTKTVQK*NRLYSRPVSKLTEDIRQKP 599
EFA + +EF ++ N K+ E + + N+ S V KL ++ R K
Sbjct: 44 EFAEATTREPCMREFEQKLVTNEKESLRARYEDLDQNAEAVNKALSERVDKLEKEQRAKM 103
Query: 600 T*WRIVHSVLYDYICECSQKIE 665
W + L +++ E ++E
Sbjct: 104 DQWETKTAPLNEWLAEAEVRVE 125
>SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08)
Length = 889
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Frame = +1
Query: 103 RTNSCKELHNM----LKGQYKSIALTHDLSRVIQVLL--KHSPEDIINEITKELL 249
RTN CKE + +K ++IAL + + L HS ++I+NE+ K+L+
Sbjct: 89 RTNPCKECEKLKQSKIKALVEAIALKKYARELSEALAGDDHSKQNILNELEKKLI 143
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +3
Query: 345 KKFYGHVVSLSTHAISAPVLDYAYGEFASKKEKCHMQQEFYGEIYKNTKDDKV 503
KKF+ HV T + P L F S K+K +++ ++ T DD V
Sbjct: 1493 KKFWSHVKHSRTESRGIPTLRQGNSMFISDKDKAEALNKYFESVF--TMDDGV 1543
>SB_10683| Best HMM Match : Stathmin (HMM E-Value=0.0011)
Length = 299
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +3
Query: 399 VLDYAYGEFASKKEKCHMQQEFYGE----IYKNTKDDKVKTSEMHTKTVQK*NRLYSRPV 566
V D A + +EK + E Y E I K T++ K+ + H KTVQ ++ +
Sbjct: 88 VQDLANQQIRQTEEKIKQKMEAYRENKEAIEKETQE-KLLAKDEHVKTVQAQAQVMAEEH 146
Query: 567 SKLTED-IRQK 596
SK+TE+ ++QK
Sbjct: 147 SKVTEEKLQQK 157
>SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 829
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 135 HIVQFFTGVCSEVRFHNFSLYLCC*QLGLM*NLKYFSC 22
H+ +F+T VC V S+ L C + L ++K F C
Sbjct: 232 HVTRFYTSVCDLVLLVCDSVLLVCDSMSLGCDMKIFGC 269
>SB_2049| Best HMM Match : Ribosomal_LX (HMM E-Value=0.98)
Length = 731
Score = 29.1 bits (62), Expect = 3.6
Identities = 31/96 (32%), Positives = 41/96 (42%)
Frame = +1
Query: 115 CKELHNMLKGQYKSIALTHDLSRVIQVLLKHSPEDIINEITKELLDI*YRWVNLSTHIIP 294
C E H + G + I +THD RV + +H P I+ W N S+ I P
Sbjct: 157 CAERHGVC-GFLQFIVVTHDALRVYHQIARHQPHSCIS------------W-NSSSQICP 202
Query: 295 LSEY*NMEQISLGMRF*RSFMDMLYPCQLMLLVHLS 402
L Y +E SL F S ++ PC LL LS
Sbjct: 203 L--YRALETSSLIEFFILSAETIVSPCFATLLNRLS 236
>SB_24457| Best HMM Match : TPR_2 (HMM E-Value=1.4e-16)
Length = 1134
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +3
Query: 345 KKFYGHVVSLSTHAISAPVLDYAYGEFASKKEKCHMQQEFYGEIY 479
KKF+ HV T + S P L + S K+K +++ ++
Sbjct: 868 KKFWSHVKHCRTESCSIPTLRQGDSMYISDKDKAEALNKYFESVF 912
>SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1134
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 249 RHIVQMGQSKYAHHSVKRILKY--GTDFIRHEVLKKFYGHVVSLSTHAISAPVLDYAYGE 422
R +V+ +K V ++L GT+ H + K+F+ ++ S TH + L GE
Sbjct: 580 RKLVKKNLAKAHSEYVSQLLTVPKGTETANHTITKRFWTYIKSKKTHDVGVAPLRDDKGE 639
Query: 423 FAS 431
S
Sbjct: 640 LVS 642
>SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2)
Length = 329
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +3
Query: 345 KKFYGHVVSLSTHAISAPVLDYAYGEFASKKEKCHMQQEFYGEIYKNTKDDKV 503
KKF+ HV T + P L F S K+K +++ ++ T DD V
Sbjct: 76 KKFWSHVKHSRTESRGIPTLRQGNSMFISDKDKAEALNKYFESVF--TIDDGV 126
>SB_23011| Best HMM Match : Mo-nitro_C (HMM E-Value=1.4)
Length = 420
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 115 CKELHNMLKGQYKSIALTHDLSRVIQVLLKHSP 213
C ELH + +G + I + HD RV ++ +H P
Sbjct: 334 CAELHGV-RGFLQLIVVAHDALRVYHLIARHQP 365
>SB_47092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +3
Query: 381 HAISAPVLDYAYGEFASKKEKCHMQQEFYGEI--YKNTKDDKVKTS 512
HA AP +G F K H QQ + E+ ++NT D K +
Sbjct: 459 HAAPAPPSSKTHGNFTEKVAHEHRQQNYQAELTRWQNTLDIHTKAT 504
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,703,126
Number of Sequences: 59808
Number of extensions: 426870
Number of successful extensions: 1024
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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