SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40317
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19246| Best HMM Match : CPL (HMM E-Value=5.99994e-41)               30   2.1  
SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)                    29   2.8  
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)                    29   2.8  
SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08)                   29   2.8  
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_10683| Best HMM Match : Stathmin (HMM E-Value=0.0011)               29   2.8  
SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_2049| Best HMM Match : Ribosomal_LX (HMM E-Value=0.98)              29   3.6  
SB_24457| Best HMM Match : TPR_2 (HMM E-Value=1.4e-16)                 29   4.8  
SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2)                   29   4.8  
SB_23011| Best HMM Match : Mo-nitro_C (HMM E-Value=1.4)                29   4.8  
SB_47092| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_19246| Best HMM Match : CPL (HMM E-Value=5.99994e-41)
          Length = 506

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
 Frame = +3

Query: 336 EVLKKFYGHVVSLSTHAISAPVLDYAYGEFASKKEKCHMQQEFYGEIYKNTKD-DKVKTS 512
           ++LK   GH     TH  ++ +++  Y ++A   +K  + QEFYG  +   K  D    +
Sbjct: 147 DILKLIAGH-----THEEASEIMEAIYTDYAVAAQKASLIQEFYGPEFAVFKTLDNRNLA 201

Query: 513 EMHTKTVQK*NRLYSRPVSKLTEDIRQKPT*WRIVHSVLYDYI 641
           ++  +  +K + +       L     +      IVH VL +Y+
Sbjct: 202 KILAEQPEKKDEILRNLKEALGPLTDKSVITHNIVHRVLSEYM 244


>SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)
          Length = 419

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +3

Query: 345 KKFYGHVVSLSTHAISAPVLDYAYGEFASKKEKCHMQQEFYGEIYKNTKDDKV 503
           KKF+ HV    T +   P L      F S K+K     +++  ++  T DD V
Sbjct: 94  KKFWSHVKHSRTESRGIPTLRQGNSMFISDKDKAEALNKYFESVF--TMDDGV 144


>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 2322

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/82 (23%), Positives = 35/82 (42%)
 Frame = +3

Query: 420 EFASKKEKCHMQQEFYGEIYKNTKDDKVKTSEMHTKTVQK*NRLYSRPVSKLTEDIRQKP 599
           EFA    +    +EF  ++  N K+      E   +  +  N+  S  V KL ++ R K 
Sbjct: 44  EFAEATTREPCMREFEQKLVTNEKESLRARYEDLDQNAEAVNKALSERVDKLEKEQRAKM 103

Query: 600 T*WRIVHSVLYDYICECSQKIE 665
             W    + L +++ E   ++E
Sbjct: 104 DQWETKTAPLNEWLAEAEVRVE 125


>SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08)
          Length = 889

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
 Frame = +1

Query: 103 RTNSCKELHNM----LKGQYKSIALTHDLSRVIQVLL--KHSPEDIINEITKELL 249
           RTN CKE   +    +K   ++IAL      + + L    HS ++I+NE+ K+L+
Sbjct: 89  RTNPCKECEKLKQSKIKALVEAIALKKYARELSEALAGDDHSKQNILNELEKKLI 143


>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2396

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +3

Query: 345  KKFYGHVVSLSTHAISAPVLDYAYGEFASKKEKCHMQQEFYGEIYKNTKDDKV 503
            KKF+ HV    T +   P L      F S K+K     +++  ++  T DD V
Sbjct: 1493 KKFWSHVKHSRTESRGIPTLRQGNSMFISDKDKAEALNKYFESVF--TMDDGV 1543


>SB_10683| Best HMM Match : Stathmin (HMM E-Value=0.0011)
          Length = 299

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
 Frame = +3

Query: 399 VLDYAYGEFASKKEKCHMQQEFYGE----IYKNTKDDKVKTSEMHTKTVQK*NRLYSRPV 566
           V D A  +    +EK   + E Y E    I K T++ K+   + H KTVQ   ++ +   
Sbjct: 88  VQDLANQQIRQTEEKIKQKMEAYRENKEAIEKETQE-KLLAKDEHVKTVQAQAQVMAEEH 146

Query: 567 SKLTED-IRQK 596
           SK+TE+ ++QK
Sbjct: 147 SKVTEEKLQQK 157


>SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 829

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 135 HIVQFFTGVCSEVRFHNFSLYLCC*QLGLM*NLKYFSC 22
           H+ +F+T VC  V     S+ L C  + L  ++K F C
Sbjct: 232 HVTRFYTSVCDLVLLVCDSVLLVCDSMSLGCDMKIFGC 269


>SB_2049| Best HMM Match : Ribosomal_LX (HMM E-Value=0.98)
          Length = 731

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 31/96 (32%), Positives = 41/96 (42%)
 Frame = +1

Query: 115 CKELHNMLKGQYKSIALTHDLSRVIQVLLKHSPEDIINEITKELLDI*YRWVNLSTHIIP 294
           C E H +  G  + I +THD  RV   + +H P   I+            W N S+ I P
Sbjct: 157 CAERHGVC-GFLQFIVVTHDALRVYHQIARHQPHSCIS------------W-NSSSQICP 202

Query: 295 LSEY*NMEQISLGMRF*RSFMDMLYPCQLMLLVHLS 402
           L  Y  +E  SL   F  S   ++ PC   LL  LS
Sbjct: 203 L--YRALETSSLIEFFILSAETIVSPCFATLLNRLS 236


>SB_24457| Best HMM Match : TPR_2 (HMM E-Value=1.4e-16)
          Length = 1134

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 345  KKFYGHVVSLSTHAISAPVLDYAYGEFASKKEKCHMQQEFYGEIY 479
            KKF+ HV    T + S P L      + S K+K     +++  ++
Sbjct: 868  KKFWSHVKHCRTESCSIPTLRQGDSMYISDKDKAEALNKYFESVF 912


>SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1134

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +3

Query: 249 RHIVQMGQSKYAHHSVKRILKY--GTDFIRHEVLKKFYGHVVSLSTHAISAPVLDYAYGE 422
           R +V+   +K     V ++L    GT+   H + K+F+ ++ S  TH +    L    GE
Sbjct: 580 RKLVKKNLAKAHSEYVSQLLTVPKGTETANHTITKRFWTYIKSKKTHDVGVAPLRDDKGE 639

Query: 423 FAS 431
             S
Sbjct: 640 LVS 642


>SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2)
          Length = 329

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +3

Query: 345 KKFYGHVVSLSTHAISAPVLDYAYGEFASKKEKCHMQQEFYGEIYKNTKDDKV 503
           KKF+ HV    T +   P L      F S K+K     +++  ++  T DD V
Sbjct: 76  KKFWSHVKHSRTESRGIPTLRQGNSMFISDKDKAEALNKYFESVF--TIDDGV 126


>SB_23011| Best HMM Match : Mo-nitro_C (HMM E-Value=1.4)
          Length = 420

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 115 CKELHNMLKGQYKSIALTHDLSRVIQVLLKHSP 213
           C ELH + +G  + I + HD  RV  ++ +H P
Sbjct: 334 CAELHGV-RGFLQLIVVAHDALRVYHLIARHQP 365


>SB_47092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +3

Query: 381 HAISAPVLDYAYGEFASKKEKCHMQQEFYGEI--YKNTKDDKVKTS 512
           HA  AP     +G F  K    H QQ +  E+  ++NT D   K +
Sbjct: 459 HAAPAPPSSKTHGNFTEKVAHEHRQQNYQAELTRWQNTLDIHTKAT 504


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,703,126
Number of Sequences: 59808
Number of extensions: 426870
Number of successful extensions: 1024
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -