BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV40317 (701 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_19246| Best HMM Match : CPL (HMM E-Value=5.99994e-41) 30 2.1 SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28) 29 2.8 SB_41695| Best HMM Match : Spectrin (HMM E-Value=0) 29 2.8 SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08) 29 2.8 SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8 SB_10683| Best HMM Match : Stathmin (HMM E-Value=0.0011) 29 2.8 SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6 SB_2049| Best HMM Match : Ribosomal_LX (HMM E-Value=0.98) 29 3.6 SB_24457| Best HMM Match : TPR_2 (HMM E-Value=1.4e-16) 29 4.8 SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8 SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2) 29 4.8 SB_23011| Best HMM Match : Mo-nitro_C (HMM E-Value=1.4) 29 4.8 SB_47092| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4 >SB_19246| Best HMM Match : CPL (HMM E-Value=5.99994e-41) Length = 506 Score = 29.9 bits (64), Expect = 2.1 Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 1/103 (0%) Frame = +3 Query: 336 EVLKKFYGHVVSLSTHAISAPVLDYAYGEFASKKEKCHMQQEFYGEIYKNTKD-DKVKTS 512 ++LK GH TH ++ +++ Y ++A +K + QEFYG + K D + Sbjct: 147 DILKLIAGH-----THEEASEIMEAIYTDYAVAAQKASLIQEFYGPEFAVFKTLDNRNLA 201 Query: 513 EMHTKTVQK*NRLYSRPVSKLTEDIRQKPT*WRIVHSVLYDYI 641 ++ + +K + + L + IVH VL +Y+ Sbjct: 202 KILAEQPEKKDEILRNLKEALGPLTDKSVITHNIVHRVLSEYM 244 >SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28) Length = 419 Score = 29.5 bits (63), Expect = 2.8 Identities = 16/53 (30%), Positives = 24/53 (45%) Frame = +3 Query: 345 KKFYGHVVSLSTHAISAPVLDYAYGEFASKKEKCHMQQEFYGEIYKNTKDDKV 503 KKF+ HV T + P L F S K+K +++ ++ T DD V Sbjct: 94 KKFWSHVKHSRTESRGIPTLRQGNSMFISDKDKAEALNKYFESVF--TMDDGV 144 >SB_41695| Best HMM Match : Spectrin (HMM E-Value=0) Length = 2322 Score = 29.5 bits (63), Expect = 2.8 Identities = 19/82 (23%), Positives = 35/82 (42%) Frame = +3 Query: 420 EFASKKEKCHMQQEFYGEIYKNTKDDKVKTSEMHTKTVQK*NRLYSRPVSKLTEDIRQKP 599 EFA + +EF ++ N K+ E + + N+ S V KL ++ R K Sbjct: 44 EFAEATTREPCMREFEQKLVTNEKESLRARYEDLDQNAEAVNKALSERVDKLEKEQRAKM 103 Query: 600 T*WRIVHSVLYDYICECSQKIE 665 W + L +++ E ++E Sbjct: 104 DQWETKTAPLNEWLAEAEVRVE 125 >SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08) Length = 889 Score = 29.5 bits (63), Expect = 2.8 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 6/55 (10%) Frame = +1 Query: 103 RTNSCKELHNM----LKGQYKSIALTHDLSRVIQVLL--KHSPEDIINEITKELL 249 RTN CKE + +K ++IAL + + L HS ++I+NE+ K+L+ Sbjct: 89 RTNPCKECEKLKQSKIKALVEAIALKKYARELSEALAGDDHSKQNILNELEKKLI 143 >SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2396 Score = 29.5 bits (63), Expect = 2.8 Identities = 16/53 (30%), Positives = 24/53 (45%) Frame = +3 Query: 345 KKFYGHVVSLSTHAISAPVLDYAYGEFASKKEKCHMQQEFYGEIYKNTKDDKV 503 KKF+ HV T + P L F S K+K +++ ++ T DD V Sbjct: 1493 KKFWSHVKHSRTESRGIPTLRQGNSMFISDKDKAEALNKYFESVF--TMDDGV 1543 >SB_10683| Best HMM Match : Stathmin (HMM E-Value=0.0011) Length = 299 Score = 29.5 bits (63), Expect = 2.8 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%) Frame = +3 Query: 399 VLDYAYGEFASKKEKCHMQQEFYGE----IYKNTKDDKVKTSEMHTKTVQK*NRLYSRPV 566 V D A + +EK + E Y E I K T++ K+ + H KTVQ ++ + Sbjct: 88 VQDLANQQIRQTEEKIKQKMEAYRENKEAIEKETQE-KLLAKDEHVKTVQAQAQVMAEEH 146 Query: 567 SKLTED-IRQK 596 SK+TE+ ++QK Sbjct: 147 SKVTEEKLQQK 157 >SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 829 Score = 29.1 bits (62), Expect = 3.6 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = -3 Query: 135 HIVQFFTGVCSEVRFHNFSLYLCC*QLGLM*NLKYFSC 22 H+ +F+T VC V S+ L C + L ++K F C Sbjct: 232 HVTRFYTSVCDLVLLVCDSVLLVCDSMSLGCDMKIFGC 269 >SB_2049| Best HMM Match : Ribosomal_LX (HMM E-Value=0.98) Length = 731 Score = 29.1 bits (62), Expect = 3.6 Identities = 31/96 (32%), Positives = 41/96 (42%) Frame = +1 Query: 115 CKELHNMLKGQYKSIALTHDLSRVIQVLLKHSPEDIINEITKELLDI*YRWVNLSTHIIP 294 C E H + G + I +THD RV + +H P I+ W N S+ I P Sbjct: 157 CAERHGVC-GFLQFIVVTHDALRVYHQIARHQPHSCIS------------W-NSSSQICP 202 Query: 295 LSEY*NMEQISLGMRF*RSFMDMLYPCQLMLLVHLS 402 L Y +E SL F S ++ PC LL LS Sbjct: 203 L--YRALETSSLIEFFILSAETIVSPCFATLLNRLS 236 >SB_24457| Best HMM Match : TPR_2 (HMM E-Value=1.4e-16) Length = 1134 Score = 28.7 bits (61), Expect = 4.8 Identities = 12/45 (26%), Positives = 21/45 (46%) Frame = +3 Query: 345 KKFYGHVVSLSTHAISAPVLDYAYGEFASKKEKCHMQQEFYGEIY 479 KKF+ HV T + S P L + S K+K +++ ++ Sbjct: 868 KKFWSHVKHCRTESCSIPTLRQGDSMYISDKDKAEALNKYFESVF 912 >SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1134 Score = 28.7 bits (61), Expect = 4.8 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Frame = +3 Query: 249 RHIVQMGQSKYAHHSVKRILKY--GTDFIRHEVLKKFYGHVVSLSTHAISAPVLDYAYGE 422 R +V+ +K V ++L GT+ H + K+F+ ++ S TH + L GE Sbjct: 580 RKLVKKNLAKAHSEYVSQLLTVPKGTETANHTITKRFWTYIKSKKTHDVGVAPLRDDKGE 639 Query: 423 FAS 431 S Sbjct: 640 LVS 642 >SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2) Length = 329 Score = 28.7 bits (61), Expect = 4.8 Identities = 16/53 (30%), Positives = 24/53 (45%) Frame = +3 Query: 345 KKFYGHVVSLSTHAISAPVLDYAYGEFASKKEKCHMQQEFYGEIYKNTKDDKV 503 KKF+ HV T + P L F S K+K +++ ++ T DD V Sbjct: 76 KKFWSHVKHSRTESRGIPTLRQGNSMFISDKDKAEALNKYFESVF--TIDDGV 126 >SB_23011| Best HMM Match : Mo-nitro_C (HMM E-Value=1.4) Length = 420 Score = 28.7 bits (61), Expect = 4.8 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +1 Query: 115 CKELHNMLKGQYKSIALTHDLSRVIQVLLKHSP 213 C ELH + +G + I + HD RV ++ +H P Sbjct: 334 CAELHGV-RGFLQLIVVAHDALRVYHLIARHQP 365 >SB_47092| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 619 Score = 27.9 bits (59), Expect = 8.4 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Frame = +3 Query: 381 HAISAPVLDYAYGEFASKKEKCHMQQEFYGEI--YKNTKDDKVKTS 512 HA AP +G F K H QQ + E+ ++NT D K + Sbjct: 459 HAAPAPPSSKTHGNFTEKVAHEHRQQNYQAELTRWQNTLDIHTKAT 504 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,703,126 Number of Sequences: 59808 Number of extensions: 426870 Number of successful extensions: 1024 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 942 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1024 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1841633001 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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