Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40317
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.1  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   2.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.5  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 535 WTVFVCISEVFTLSSFVFL 479
           W+ F+CIS V+ +   +F+
Sbjct: 399 WSAFLCISLVYIIMLIIFI 417


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 23/67 (34%), Positives = 28/67 (41%)
 Frame = -3

Query: 555 SIADFISGLSLYASLRSSPCHLLYSYKSLHRILVACGIFPFSKQTPHMHNPRQVH**HEL 376
           S+A   S LS  ++L  S CH    Y S        G  P S   PH H+P Q H  H  
Sbjct: 282 SLASHHSHLS--SALGRSACHSPGVYPS------TAGFLPPSYH-PHQHHPSQYH-PHRG 331

Query: 375 TGIQHVH 355
           +   H H
Sbjct: 332 SSPHHQH 338


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 249 RHIVQMGQSKY-AHHSVKRILKYGTDFIRHEVLKKFYGHVVSLSTHAISAPVLDYAYGEF 425
           R  V +    Y  + SV  I K+GT F +  +L++F+               LDYAY + 
Sbjct: 3   REFVLLASLLYLGNESVHGIQKWGTQFGQAPLLERFFWR------------TLDYAYPDE 50

Query: 426 ASK 434
           ASK
Sbjct: 51  ASK 53


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 258 VQMGQSKYAHHSVKRILKYGTDFIRHEVLKKFY 356
           + +G +     +  + L Y TDFI +  L  FY
Sbjct: 321 IVLGLNNTPDRTPDQCLFYNTDFIIYSSLSSFY 353


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 136  LKGQYKSIALTHDLSRVIQVLLKHSP 213
            L+GQ +  +L  D S    ++L+H+P
Sbjct: 1244 LRGQERQRSLFKDSSPATALMLQHAP 1269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,554
Number of Sequences: 438
Number of extensions: 3907
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)