Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40316
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 100 2e-22
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 97 2e-21
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 29 0.80
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 28 1.4
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 27 2.4
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 3.2
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 5.6
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 5.6
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 25 7.5
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.9
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 25 9.9
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 9.9
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 100 bits (239), Expect = 2e-22
Identities = 48/84 (57%), Positives = 64/84 (76%)
Frame = -1
Query: 507 GTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKL 328
G K A++ LKGR+ EVSLADLQ D E SFRK +L E +QG++ L +F+G D+T+DKL
Sbjct: 53 GLKNANDSLKGRILEVSLADLQKDE--EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKL 110
Query: 327 RWMVKKWQTLIEANIDVKTTDGYV 256
R +V+KWQ+ IEAN +KTTDGY+
Sbjct: 111 RSLVRKWQSTIEANQTIKTTDGYL 134
Score = 74.1 bits (174), Expect = 2e-14
Identities = 34/76 (44%), Positives = 49/76 (64%)
Frame = -3
Query: 253 RVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAK 74
R+F IGFT++ +KT YAQ +Q+RAI +KM ++I ++E+V KLIP+ I +
Sbjct: 136 RIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGR 195
Query: 73 DIEKACHGIYPLARCF 26
IEKA + IYPL F
Sbjct: 196 AIEKATNNIYPLQNVF 211
Score = 52.8 bits (121), Expect = 4e-08
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = -2
Query: 605 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVN 516
+VDPF+RKDWYD+KAP+ F + VG TLVN
Sbjct: 20 VVDPFSRKDWYDIKAPAFFEVKNVGKTLVN 49
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 97.1 bits (231), Expect = 2e-21
Identities = 46/84 (54%), Positives = 64/84 (76%)
Frame = -1
Query: 507 GTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKL 328
G K A++ LKGR+ EVSLADLQ D E +FRK +L E +QG++ L +F+G+ +T+DKL
Sbjct: 53 GLKNANDSLKGRILEVSLADLQKDE--EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKL 110
Query: 327 RWMVKKWQTLIEANIDVKTTDGYV 256
R +V+KWQT IEA+ +KTTDGY+
Sbjct: 111 RSLVRKWQTTIEADQTIKTTDGYL 134
Score = 75.4 bits (177), Expect = 7e-15
Identities = 34/72 (47%), Positives = 51/72 (70%)
Frame = -3
Query: 253 RVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAK 74
RVF IGFT + + +KT YAQ +Q+RAIR+KM ++I ++ +RE+V KLIP+ I +
Sbjct: 136 RVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGR 195
Query: 73 DIEKACHGIYPL 38
+IE+A I+PL
Sbjct: 196 EIERATGSIFPL 207
Score = 51.2 bits (117), Expect = 1e-07
Identities = 19/30 (63%), Positives = 25/30 (83%)
Frame = -2
Query: 605 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVN 516
+VDPF+RK+WYD+KAP+ F + VG TLVN
Sbjct: 20 VVDPFSRKEWYDIKAPAFFEVKNVGKTLVN 49
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 28.7 bits (61), Expect = 0.80
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = -1
Query: 471 VFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 298
VF+V + + D R+ + +A Q R V C H MDL + LR +V ++ L
Sbjct: 86 VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143
Query: 297 IEANIDVKTT 268
+E + D++TT
Sbjct: 144 LETSKDLETT 153
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = -1
Query: 504 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 325
TK+A KG +V++ L+ DAE + + F I EY++ N D T K
Sbjct: 91 TKLAET--KGAAADVNI--LKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGK-- 144
Query: 324 WMVKKWQTLIE 292
+ +W ++ E
Sbjct: 145 -FINEWDSIFE 154
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -1
Query: 348 DLTTDKLRWMVKKWQTLIEANIDVKTTDGYVHVSSALVSPIRTP*ANARRATPSTL 181
D T+D V+ W+ L+EA D TD +V S+ + S R A++ + PS++
Sbjct: 396 DPTSDTSMTNVRSWEGLMEAYFD---TDHHVEASALMKSFFRK--ADSNQVIPSSI 446
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 304 LPFFNHPPELIGCEVHAVEVAEHITS 381
L H PEL+ C +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -2
Query: 245 LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV 153
LHW+ L+ +Q + P H+GQ S + NV
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNV 1194
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = -3
Query: 265 WIRSRV-FCIGFTNKDSLSQRKTCY 194
W+ S FC G NKD++ K C+
Sbjct: 468 WLASTYSFCDGIVNKDTVMTSKACF 492
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = -3
Query: 238 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELRE 110
G T +DS+ ++ A H + R +++K E ++ D +N +++
Sbjct: 7 GITQEDSIEKKSKNVASHGEKRKVKRKK-EDLSMDGSNDGVKD 48
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 149 FTHFLSDCSDLSVLGVARLALAQGVLIGETNAEDT*TYPSVV 274
F L +CS L + L + L G+TN++ T + S +
Sbjct: 574 FIEVLKECSQTWKLAQRSIVLIENTLKGKTNSQSTSEFVSPI 615
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 435 CQLVDQPGKLRKLFPSILPKQFSFPGTVDKRGADL 539
CQL ++ + KLF S +PK F VD+ A L
Sbjct: 789 CQLGNETIFMLKLFTSSIPKAFCAVEIVDRLAAML 823
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +1
Query: 325 PELIGCEVHAVEVAEHITSL 384
PELI C H EV E I SL
Sbjct: 216 PELINCIAHPEEVPETIHSL 235
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,541
Number of Sequences: 5004
Number of extensions: 58739
Number of successful extensions: 176
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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