Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40316
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 125 4e-29
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 123 1e-28
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 122 2e-28
04_03_0031 + 9933279-9933282,9933288-9933728,9934029-9934657 29 3.3
06_03_0290 - 19193707-19193752,19193822-19194090 28 5.9
04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236... 28 5.9
10_05_0060 + 8682253-8682305,8682933-8683162,8684448-8684683,868... 28 7.7
09_02_0493 - 9869283-9870001,9870142-9870352,9871639-9871800 28 7.7
05_01_0006 - 44159-44206,44805-44850,45730-45818,46377-46394,464... 28 7.7
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 125 bits (301), Expect = 4e-29
Identities = 63/84 (75%), Positives = 71/84 (84%)
Frame = -1
Query: 507 GTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKL 328
GTKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQG+NVL NF GM TTDKL
Sbjct: 53 GTKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKL 110
Query: 327 RWMVKKWQTLIEANIDVKTTDGYV 256
R +VKKWQTLIEA++DVKTTDGY+
Sbjct: 111 RSLVKKWQTLIEAHVDVKTTDGYM 134
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/76 (47%), Positives = 53/76 (69%)
Frame = -3
Query: 253 RVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAK 74
R+FCIGFT + ++TCYAQ +Q+R IR+KM EI+ ++ +L+E+V+K IP+ I K
Sbjct: 136 RLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGK 195
Query: 73 DIEKACHGIYPLARCF 26
+IEKA I+PL F
Sbjct: 196 EIEKATSSIFPLQNVF 211
Score = 50.8 bits (116), Expect = 1e-06
Identities = 19/29 (65%), Positives = 25/29 (86%)
Frame = -2
Query: 602 VDPFTRKDWYDVKAPSMFSKRQVGTTLVN 516
VDPF +KDWYD+KAPS+F+ R +G TLV+
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVS 49
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 123 bits (297), Expect = 1e-28
Identities = 63/84 (75%), Positives = 70/84 (83%)
Frame = -1
Query: 507 GTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKL 328
GTKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQGRNVL NF GM TTDKL
Sbjct: 53 GTKIASEGLKHRVFEVSLADLQNDED--QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKL 110
Query: 327 RWMVKKWQTLIEANIDVKTTDGYV 256
R +VKKWQTLIEA++DVKTTD Y+
Sbjct: 111 RSLVKKWQTLIEAHVDVKTTDNYM 134
Score = 81.4 bits (192), Expect = 6e-16
Identities = 35/76 (46%), Positives = 52/76 (68%)
Frame = -3
Query: 253 RVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAK 74
R+FCIGFT + ++TCYAQ +Q+R IR+KM EI+ + +L+E+V+K IP+ I K
Sbjct: 136 RLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGK 195
Query: 73 DIEKACHGIYPLARCF 26
+IEK+ I+PL F
Sbjct: 196 EIEKSTSSIFPLQNVF 211
Score = 51.2 bits (117), Expect = 7e-07
Identities = 19/29 (65%), Positives = 26/29 (89%)
Frame = -2
Query: 602 VDPFTRKDWYDVKAPSMFSKRQVGTTLVN 516
VDPF++KDWYD+KAP++FS R +G TLV+
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVS 49
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 122 bits (295), Expect = 2e-28
Identities = 62/84 (73%), Positives = 70/84 (83%)
Frame = -1
Query: 507 GTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKL 328
GTKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQG+NVL NF GM TTDKL
Sbjct: 53 GTKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKL 110
Query: 327 RWMVKKWQTLIEANIDVKTTDGYV 256
R +VKKWQTLIEA++DVKTTD Y+
Sbjct: 111 RSLVKKWQTLIEAHVDVKTTDNYM 134
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/76 (47%), Positives = 53/76 (69%)
Frame = -3
Query: 253 RVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAK 74
R+FCIGFT + ++TCYAQ +Q+R IR+KM EI+ ++ +L+E+V+K IP+ I K
Sbjct: 136 RLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGK 195
Query: 73 DIEKACHGIYPLARCF 26
+IEKA I+PL F
Sbjct: 196 EIEKATSSIFPLQNVF 211
Score = 51.2 bits (117), Expect = 7e-07
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = -2
Query: 602 VDPFTRKDWYDVKAPSMFSKRQVGTTLVN 516
VDPF +KDWYD+KAPS+F+ R VG TLV+
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVS 49
>04_03_0031 + 9933279-9933282,9933288-9933728,9934029-9934657
Length = 357
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 335 ISSGGWLKNGRLSSKPTLM*RQPMDTFTCLL 243
I S WL+ G LSS+ ++ R P T TCL+
Sbjct: 118 IMSNEWLREGELSSE-SIQIRCPASTITCLI 147
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 368 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 279
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>04_03_0983 +
21423086-21423280,21423330-21423404,21423531-21423632,
21423721-21423774,21423880-21423972,21424526-21424618,
21427329-21427433,21427517-21427615,21427701-21427997,
21428512-21428622
Length = 407
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +2
Query: 326 LSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARETSKTLP---FNPSEA 496
+++ +R+ PW L++ R T +A + +KD SA + +S E K + P +
Sbjct: 274 ITIREIRNHPWFLKNLPRELTEAAQAMYYKKDNSAPTYSVQSVEEIMKIVEEARTPPRSS 333
Query: 497 IFVPGYG*Q 523
V G+G Q
Sbjct: 334 TPVAGFGWQ 342
>10_05_0060 +
8682253-8682305,8682933-8683162,8684448-8684683,
8687565-8688128
Length = 360
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 8 LSPFGCKTSRQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDV-ACNDFT 154
LS CK R R+D + G +D+ G+ V + E +S+V +C D T
Sbjct: 223 LSKPSCKPFRSRIDGVGGAVDIT-VGLLPSAVEAIFEVSISEVQSCFDLT 271
>09_02_0493 - 9869283-9870001,9870142-9870352,9871639-9871800
Length = 363
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +2
Query: 230 GETNAEDT*TYPSVVFTSMLASMRVC---HFLTIHLSLSVVRSMPWKLQST 373
GE +++ T +P+V+FT ++ C H +H + + M W+ T
Sbjct: 152 GEQSSQQTSAHPAVIFTPPASNNIPCAPHHHYMLHAPFAPLEQMQWRHPGT 202
>05_01_0006 -
44159-44206,44805-44850,45730-45818,46377-46394,
46490-46609,46702-46772,47038-47086,47567-47658,
47769-47811,47928-48049,48143-48426,48961-49148,
49220-49336,49516-49557,49991-50101,50530-50688,
50710-50769,50850-50927,51010-51103,51182-51483,
51659-51721,51808-51936
Length = 774
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 303 TLIEANIDVKTTDGYVHVSSALVSPIR 223
T +AN+D+ Y HV S + SP+R
Sbjct: 384 TTSKANLDIVPQQAYSHVQSPMSSPVR 410
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,273,167
Number of Sequences: 37544
Number of extensions: 418906
Number of successful extensions: 1246
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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