Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40316
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   118   5e-27
Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.       30   1.3  
U41534-4|AAB47596.1|  323|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related...    29   3.0  
Z81134-4|CAB03451.1|  322|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z81544-7|CAB04432.2|  551|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U80030-12|AAG24159.1|  391|Caenorhabditis elegans Hypothetical p...    27   9.1  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  118 bits (283), Expect = 5e-27
 Identities = 60/83 (72%), Positives = 66/83 (79%)
 Frame = -1

Query: 507 GTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKL 328
           GTKIASEGLKGRVFEVSL DL    ++E  FRKF+LIAE VQG+NVL NFH M +T DKL
Sbjct: 52  GTKIASEGLKGRVFEVSLGDLN---NSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKL 108

Query: 327 RWMVKKWQTLIEANIDVKTTDGY 259
             +VKKW TLIEAN  VKTTDGY
Sbjct: 109 CSIVKKWHTLIEANTAVKTTDGY 131



 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 37/76 (48%), Positives = 50/76 (65%)
 Frame = -3

Query: 253 RVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAK 74
           RVF I FT K     +KT Y + +++R IR +M   I ++VT  +L+EVV+KLIPDSI K
Sbjct: 134 RVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGK 193

Query: 73  DIEKACHGIYPLARCF 26
           DIEK C  +YPL   +
Sbjct: 194 DIEKTCSKLYPLQEVY 209



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 21/29 (72%), Positives = 27/29 (93%)
 Frame = -2

Query: 602 VDPFTRKDWYDVKAPSMFSKRQVGTTLVN 516
           VDPF+RK+WYD+KAP+MF+ RQVG TL+N
Sbjct: 20  VDPFSRKEWYDIKAPNMFNTRQVGKTLIN 48


>Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical protein
            C25G4.5 protein.
          Length = 1263

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 299  RVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARE-TSKTL 475
            R  H    H  LS+  SMP ++  T+RP +  +  L++  + +  +   RS R   S  +
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKRSWMSDFI 1181

Query: 476  PFNPSEAI 499
              N SE++
Sbjct: 1182 VLNSSESL 1189


>Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical
           protein K08F8.2 protein.
          Length = 401

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +2

Query: 287 LASMRVCHFLTIHLSLSVVRSMPWKLQ-STLRPCTY-SAINLNLRKDLSASVSACRSARE 460
           +AS++    LT+ L L     +P  LQ   L+P T  S +  + ++  S S S+  S+  
Sbjct: 132 IASLQASSMLTVPL-LQAASHIPSMLQLCQLQPTTIQSPVYASTQQPASTSASSLFSSSS 190

Query: 461 TSKTLPFNPSEA 496
           +S   PF PSE+
Sbjct: 191 SSAFHPFRPSES 202


>U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.
          Length = 1263

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 299  RVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARE-TSKTL 475
            R  H    H  LS+  SMP ++  T+RP +  +  L++  + +  +   RS R   S  +
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKRSWMSDFI 1181

Query: 476  PFNPSEAI 499
              N SE++
Sbjct: 1182 VLNSSESL 1189


>U41534-4|AAB47596.1|  323|Caenorhabditis elegans Hypothetical
           protein C16A3.6 protein.
          Length = 323

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = -3

Query: 280 CEDNRWIRSRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKK--MCEIITRDVTNSEL-RE 110
           C    W + ++FC    N   L  R +C   ++Q   +R++  +C +  + V  S   R 
Sbjct: 16  CAYKAWTKPKMFCKNEMNLTGLCNRASCPLANSQYATVREENGVCYLYAKVVERSHYPRR 75

Query: 109 VVNKLIPDSIAKDIEKACHGI 47
           +  K     ++KD+ KA   I
Sbjct: 76  LWEK---TKLSKDMNKALEQI 93


>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
           see also lmb-protein 2 protein.
          Length = 1535

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +1

Query: 181 ECAGRSTSCVGSRSPYW*NQ--CRRHVNVSIGCLHINVGFD--ESLPFFNHPPELIGCEV 348
           +C G ++ CVGS S    N+  CR        C H   G D  E LPF+N  P   G  V
Sbjct: 273 KCNGHASECVGSSSVDGENRLVCR--------CEHNTQGADCNECLPFYNDRPWRSGTSV 324

Query: 349 HAVE 360
            A E
Sbjct: 325 EANE 328


>Z81134-4|CAB03451.1|  322|Caenorhabditis elegans Hypothetical
           protein T28D6.7 protein.
          Length = 322

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -1

Query: 567 QGSVYVQQEASRHHACQPYPGTKIASEGLKGRVFEVSLADLQADTDAER 421
           Q + Y   + +RH A Q  P  ++AS+    ++  V++A +  D+D E+
Sbjct: 22  QKATYSGIKLTRHVAVQEKPRPRVASKQCTSKLMRVNVARVWEDSDYEK 70


>Z81544-7|CAB04432.2|  551|Caenorhabditis elegans Hypothetical
           protein F49C5.3 protein.
          Length = 551

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -3

Query: 232 TNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELRE---VVNKLIPDSIAKDIE 65
           T + S+S     + QH Q RA++K M E +   V N ++ E   VV K + D    +I+
Sbjct: 198 TGRSSISAGFDVF-QHLQNRAVQKTMIEQLESAVRNQDVMEMGNVVKKGLEDGTLSEIQ 255


>Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical
           protein B0001.7 protein.
          Length = 731

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -1

Query: 483 LKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRN 373
           L+G  + +S+ D +A TD E S +  R IAE+++ R+
Sbjct: 201 LRGCSWIMSVVDGKAQTDGEFSDKDLREIAEFIRERH 237


>U80030-12|AAG24159.1|  391|Caenorhabditis elegans Hypothetical
           protein K12D9.1 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 53  MAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTH 157
           ++GL+   GNG++ +L      FRV DV C +  H
Sbjct: 184 ISGLIPAFGNGIKEKLED--GGFRVLDVGCGEGFH 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,869,847
Number of Sequences: 27780
Number of extensions: 345787
Number of successful extensions: 1056
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)