Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40316
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   128   4e-30
At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           125   2e-29
At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]...    31   0.52 
At3g03930.1 68416.m00409 protein kinase-related similar to serin...    29   2.8  
At4g03150.1 68417.m00428 expressed protein                             27   8.5  
At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]...    27   8.5  
At2g21630.1 68415.m02573 transport protein, putative similar to ...    27   8.5  

>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  128 bits (308), Expect = 4e-30
 Identities = 64/83 (77%), Positives = 69/83 (83%)
 Frame = -1

Query: 507 GTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKL 328
           GTKIASEGLK RVFEVSLADLQ D D   ++RK RL AE VQGRNVLC F GMD TTDKL
Sbjct: 53  GTKIASEGLKHRVFEVSLADLQGDED--NAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKL 110

Query: 327 RWMVKKWQTLIEANIDVKTTDGY 259
           R +VKKWQTLIEA++DVKTTD Y
Sbjct: 111 RSLVKKWQTLIEAHVDVKTTDSY 133



 Score = 84.6 bits (200), Expect = 5e-17
 Identities = 35/76 (46%), Positives = 56/76 (73%)
 Frame = -3

Query: 253 RVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAK 74
           R+FCI FT + +   ++TCYAQ +Q+R IR+KM +I+ R+ ++ +L+++V K IP++I +
Sbjct: 136 RLFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGR 195

Query: 73  DIEKACHGIYPLARCF 26
           +IEKA  GIYPL   F
Sbjct: 196 EIEKATQGIYPLQNVF 211



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 21/29 (72%), Positives = 26/29 (89%)
 Frame = -2

Query: 602 VDPFTRKDWYDVKAPSMFSKRQVGTTLVN 516
           VDPF++KDWYDVKAPS+F+ R VG TLV+
Sbjct: 21  VDPFSKKDWYDVKAPSIFTHRNVGKTLVS 49


>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  125 bits (302), Expect = 2e-29
 Identities = 64/83 (77%), Positives = 69/83 (83%)
 Frame = -1

Query: 507 GTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKL 328
           GTKIASEGLK RVFEVSLADLQ D D   ++RK RL AE VQGRNVL  F GMD TTDKL
Sbjct: 53  GTKIASEGLKHRVFEVSLADLQNDED--NAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKL 110

Query: 327 RWMVKKWQTLIEANIDVKTTDGY 259
           R +VKKWQTLIEA++DVKTTDGY
Sbjct: 111 RSLVKKWQTLIEAHVDVKTTDGY 133



 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 36/76 (47%), Positives = 56/76 (73%)
 Frame = -3

Query: 253 RVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAK 74
           R+FCI FT + +   ++TCYAQ +Q+R IR+KM EI+ ++ ++ +L+E+V K IP++I +
Sbjct: 136 RMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGR 195

Query: 73  DIEKACHGIYPLARCF 26
           +IEKA  GIYPL   F
Sbjct: 196 EIEKATQGIYPLQNVF 211



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 20/29 (68%), Positives = 24/29 (82%)
 Frame = -2

Query: 602 VDPFTRKDWYDVKAPSMFSKRQVGTTLVN 516
           VDPF++KDWYDVKAP  F+ R VG TLV+
Sbjct: 21  VDPFSKKDWYDVKAPGSFTNRNVGKTLVS 49


>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P49361 Glycine dehydrogenase [decarboxylating] A,
           mitochondrial precursor (EC 1.4.4.2) {Flaveria
           pringlei}; contains Pfam profile PF02347: Glycine
           cleavage system P-protein
          Length = 1037

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +2

Query: 14  PFGCKTSRQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDCSDLSVLG 193
           P G K+  QRV  +AG+  +  N +    V  LP F    + C+D  H ++D +  S + 
Sbjct: 421 PAGLKSIAQRVHGLAGIFSLGLNKLGVAEVQELPFFDTVKIKCSD-AHAIADAASKSEIN 479

Query: 194 V 196
           +
Sbjct: 480 L 480


>At3g03930.1 68416.m00409 protein kinase-related similar to
           serine/threonine protein kinase [Chlamydomonas
           reinhardtii] GI:18139937
          Length = 287

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/73 (24%), Positives = 32/73 (43%)
 Frame = -1

Query: 324 WMVKKWQTLIEANIDVKTTDGYVHVSSALVSPIRTP*ANARRATPSTLRSEQSERKCVKS 145
           W++K+W    E N  + +  G  + SS +V    T        T  ++  +  ++K  + 
Sbjct: 125 WIMKQW----EKNYYISSIAGANNGSSLVVMSKGTRYIQQSYKTGDSIPLKWMDKKWKEG 180

Query: 144 LHATSLTLNSGRW 106
            H TS+T    RW
Sbjct: 181 FHVTSMTTGGSRW 193


>At4g03150.1 68417.m00428 expressed protein
          Length = 185

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 468 KLFPSILPKQFSFPGTVDKRGADLPLAEHRRSLDIVPIFASEWVDNLLL 614
           K  P  L K   FP T+ +R    P    RRS+   PI ++    +L L
Sbjct: 15  KSHPLSLTKHLDFPATIRRRSVSFPATIRRRSVSF-PITSAPKFPSLKL 62


>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P26969 Glycine dehydrogenase [decarboxylating],
           mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
           contains Pfam profile PF02347: Glycine cleavage system
           P-protein
          Length = 1044

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 14  PFGCKTSRQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFT 154
           P G K+  QRV  +AG+  +    +    V  LP F    V C+D T
Sbjct: 427 PEGLKSIAQRVHGLAGVFALGLKKLGTAQVQDLPFFDTVKVTCSDAT 473


>At2g21630.1 68415.m02573 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 761

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +2

Query: 305 CHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSAR 457
           CHF T+H  L  + + PW + +  RP   + + L +   L  +     +AR
Sbjct: 238 CHF-TLHSVLEELGNSPWPVAADHRPARCTGVALRIAASLLGACFPGSAAR 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,118,685
Number of Sequences: 28952
Number of extensions: 323393
Number of successful extensions: 988
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)