Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40315
(530 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794... 128 4e-30
07_01_0604 - 4491884-4491993,4493030-4493225,4494269-4494326,449... 105 2e-23
02_04_0435 + 22912993-22913456,22913847-22914012,22914096-229141... 29 2.3
03_02_0849 - 11768191-11771412 28 4.1
06_02_0080 + 11518393-11518398,11520318-11520401,11520846-115209... 27 7.1
05_04_0331 + 20317482-20318174,20318518-20318685,20318773-203188... 27 7.1
05_01_0213 - 1606383-1606816,1607695-1608355 27 9.4
>03_06_0314 -
33077621-33077869,33078218-33078280,33079392-33079449,
33079534-33079688,33079797-33080106,33080634-33080890,
33081280-33081359,33083888-33083948
Length = 410
Score = 128 bits (308), Expect = 4e-30
Identities = 55/61 (90%), Positives = 60/61 (98%)
Frame = +2
Query: 254 LVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPL 433
+VPEM+GSIVG+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPGIGATHSSRFIPL
Sbjct: 350 IVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPL 409
Query: 434 K 436
K
Sbjct: 410 K 410
Score = 85.0 bits (201), Expect = 3e-17
Identities = 50/101 (49%), Positives = 59/101 (58%), Gaps = 21/101 (20%)
Frame = +3
Query: 24 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRA---- 191
KKR FRK++YRGVDLD LLDM + L++L GLKRKPMAL+KKLR+A
Sbjct: 252 KKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAGSNF 311
Query: 192 -----------------KKEAPPNEKPEIVKTHLRNMISFP 263
KK+AP EKPE V+THLRNMI P
Sbjct: 312 EGTVFRLGFYEAGSYFVKKDAPAGEKPEPVRTHLRNMIIVP 352
>07_01_0604 -
4491884-4491993,4493030-4493225,4494269-4494326,
4494459-4494613,4495092-4495115,4495377-4495489,
4499943-4500129
Length = 280
Score = 105 bits (252), Expect = 2e-23
Identities = 50/80 (62%), Positives = 59/80 (73%)
Frame = +3
Query: 24 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 203
KKR FRK++YRGVDLD LLDM + L++L GLKRKPMAL+KKLR+AKK+A
Sbjct: 124 KKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDA 183
Query: 204 PPNEKPEIVKTHLRNMISFP 263
P EKPE V+THLRNMI P
Sbjct: 184 PAGEKPEPVRTHLRNMIIVP 203
Score = 91.9 bits (218), Expect = 3e-19
Identities = 38/44 (86%), Positives = 43/44 (97%)
Frame = +2
Query: 254 LVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKH 385
+VPEM+GSIVG+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKH
Sbjct: 201 IVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKH 244
>02_04_0435 +
22912993-22913456,22913847-22914012,22914096-22914146,
22914353-22914578,22915275-22915963,22916055-22916408
Length = 649
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 156 KPMALVKKLRRAKKEAPPNEKPEIVKTHLRNMISFPRWSVQLSAF 290
K A V KL + EA PN++P++ T R +I +P S+ L A+
Sbjct: 263 KYSAAVTKLIKDMLEASPNDRPDV--TQARALIDWPFISMILGAY 305
>03_02_0849 - 11768191-11771412
Length = 1073
Score = 28.3 bits (60), Expect = 4.1
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Frame = -1
Query: 290 KCRQLNRPSRERDHVSQVSLHDLWLLIRRSLFLGATQLLDQCHWFT--FKTTSEPPARTG 117
+ R L R + ER ++ S+ LWLL +S+ A LLD+ FT + S P+R
Sbjct: 48 RIRALLRDAEERRYIDDESVK-LWLLELKSVAYDAETLLDRLTTFTAVARLESAEPSRKR 106
Query: 116 MH*FHELLIGHIKELIEINSPVSELPE 36
+ L +G ++ +++ ++E+ E
Sbjct: 107 KRSWLNLQLGP-RQRWGLDAKITEINE 132
>06_02_0080 +
11518393-11518398,11520318-11520401,11520846-11520974,
11521362-11521450,11521589-11521772,11522414-11522504,
11522816-11522970,11523190-11523282,11523473-11523565,
11523715-11523795,11523867-11524016,11524134-11524229,
11524489-11524566
Length = 442
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 233 DSLEKHDLVPEMVGSIVGIYNGKT 304
D+ E ++LVP +GS++GI G+T
Sbjct: 199 DTEENNNLVPGFLGSLIGIRPGET 222
>05_04_0331 +
20317482-20318174,20318518-20318685,20318773-20318895,
20319094-20319165,20321217-20321431,20321521-20321593,
20322092-20322568,20322970-20323077,20323184-20323192,
20323193-20323552
Length = 765
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 58 ELISISSLICPM-SNSWN*CMPVRAGGSLVVLNVNQWHWS 174
E+I I L+C + S WN + + A ++ + VN+ HWS
Sbjct: 325 EVIEILHLVCHLWSLDWNEKIILSAYATIFIPIVNEGHWS 364
>05_01_0213 - 1606383-1606816,1607695-1608355
Length = 364
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 393 PVSVLHTAQGSFRSSRASKTTSRLSVT 473
PVSVLH S SS +S TT+ + T
Sbjct: 176 PVSVLHAQHSSSSSSSSSTTTTTTTTT 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,956,791
Number of Sequences: 37544
Number of extensions: 243844
Number of successful extensions: 518
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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