Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40315
         (530 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D) ribo...   127   5e-30
At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Stro...   127   5e-30
At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E)           124   4e-29
At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C) ribo...   124   5e-29
At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B) ribo...   122   2e-28
At5g63070.1 68418.m07914 40S ribosomal protein S15, putative           86   1e-17
At1g33850.1 68414.m04194 40S ribosomal protein S15, putative sim...    66   1e-11
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria...    46   2e-05
At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1 ...    29   2.6  
At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase, p...    27   6.0  
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR...    27   7.9  

>At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 152

 Score =  127 bits (306), Expect = 5e-30
 Identities = 53/61 (86%), Positives = 60/61 (98%)
 Frame = +2

Query: 254 LVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPL 433
           +VPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GATHSSRFIPL
Sbjct: 92  IVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPL 151

Query: 434 K 436
           K
Sbjct: 152 K 152



 Score =   99 bits (238), Expect = 9e-22
 Identities = 47/80 (58%), Positives = 57/80 (71%)
 Frame = +3

Query: 24  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 203
           KKR F+KF ++GVDLD LLDM  + L++L           GL RKPMAL+KKLR+AK+EA
Sbjct: 15  KKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREA 74

Query: 204 PPNEKPEIVKTHLRNMISFP 263
           P  EKPE V+THLRNMI  P
Sbjct: 75  PAGEKPEPVRTHLRNMIIVP 94


>At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Strong
           similarity to Oryza 40S ribosomal protein S15. ESTs
           gb|R29788,gb|ATTS0365 come from this gene
          Length = 152

 Score =  127 bits (306), Expect = 5e-30
 Identities = 53/61 (86%), Positives = 60/61 (98%)
 Frame = +2

Query: 254 LVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPL 433
           +VPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GATHSSRFIPL
Sbjct: 92  IVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPL 151

Query: 434 K 436
           K
Sbjct: 152 K 152



 Score =   99 bits (238), Expect = 9e-22
 Identities = 47/80 (58%), Positives = 57/80 (71%)
 Frame = +3

Query: 24  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 203
           KKR F+KF ++GVDLD LLDM  + L++L           GL RKPMAL+KKLR+AK+EA
Sbjct: 15  KKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREA 74

Query: 204 PPNEKPEIVKTHLRNMISFP 263
           P  EKPE V+THLRNMI  P
Sbjct: 75  PQGEKPEPVRTHLRNMIIVP 94


>At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E) 
          Length = 149

 Score =  124 bits (299), Expect = 4e-29
 Identities = 52/61 (85%), Positives = 60/61 (98%)
 Frame = +2

Query: 254 LVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPL 433
           +VPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GAT+SSRFIPL
Sbjct: 89  IVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPL 148

Query: 434 K 436
           K
Sbjct: 149 K 149



 Score = 95.5 bits (227), Expect = 2e-20
 Identities = 47/80 (58%), Positives = 55/80 (68%)
 Frame = +3

Query: 24  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 203
           KKR F+KF++RGVDLD LLDM  E L++            GL RKPMAL+KKLR+AK EA
Sbjct: 12  KKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEA 71

Query: 204 PPNEKPEIVKTHLRNMISFP 263
           P  EKP  V+THLRNMI  P
Sbjct: 72  PAGEKPASVRTHLRNMIIVP 91


>At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 150

 Score =  124 bits (298), Expect = 5e-29
 Identities = 51/61 (83%), Positives = 60/61 (98%)
 Frame = +2

Query: 254 LVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPL 433
           +VPEM+GS++G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GAT+SSRFIPL
Sbjct: 90  IVPEMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPL 149

Query: 434 K 436
           K
Sbjct: 150 K 150



 Score = 97.5 bits (232), Expect = 5e-21
 Identities = 47/80 (58%), Positives = 56/80 (70%)
 Frame = +3

Query: 24  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 203
           KKR F+KF++RGVDLD LLDM  + L++L           GL RKPMAL+KKLR+AK EA
Sbjct: 13  KKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEA 72

Query: 204 PPNEKPEIVKTHLRNMISFP 263
           P  EKP  V+THLRNMI  P
Sbjct: 73  PAGEKPAAVRTHLRNMIIVP 92


>At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 152

 Score =  122 bits (294), Expect = 2e-28
 Identities = 50/61 (81%), Positives = 59/61 (96%)
 Frame = +2

Query: 254 LVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPL 433
           ++PEM+GSI+G+YNGKTFNQ+EIKPEMIGHYL EFS+TYKPV+HG+PG GATHSSRFIPL
Sbjct: 92  IMPEMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKPVRHGKPGHGATHSSRFIPL 151

Query: 434 K 436
           K
Sbjct: 152 K 152



 Score =  105 bits (252), Expect = 2e-23
 Identities = 48/82 (58%), Positives = 60/82 (73%)
 Frame = +3

Query: 18  LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 197
           L KKR F+KF+++GVDLD LLDMP + L+EL           GL RKPMAL+KKLR+AK 
Sbjct: 13  LAKKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKL 72

Query: 198 EAPPNEKPEIVKTHLRNMISFP 263
           +AP  EKPE+V+THLRNM+  P
Sbjct: 73  DAPAGEKPEVVRTHLRNMVIMP 94


>At5g63070.1 68418.m07914 40S ribosomal protein S15, putative
          Length = 160

 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 43/82 (52%), Positives = 55/82 (67%), Gaps = 2/82 (2%)
 Frame = +3

Query: 24  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 203
           KKR F+KF++RG ++D LL M N  L +L +         GLK++P+ L+KKLRRAKKEA
Sbjct: 17  KKRTFKKFSFRGFNVDALLKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKKEA 76

Query: 204 PPNE--KPEIVKTHLRNMISFP 263
                 KPE+VKTHLRNMI  P
Sbjct: 77  SDENKMKPEVVKTHLRNMIIVP 98



 Score = 84.2 bits (199), Expect = 5e-17
 Identities = 39/65 (60%), Positives = 49/65 (75%), Gaps = 4/65 (6%)
 Frame = +2

Query: 254 LVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGA----THSSR 421
           +VPEM+GS+VG++NGK FN++ IKPEMIGHYL EFS+T K V H RP I        S+R
Sbjct: 96  IVPEMIGSVVGVHNGKKFNEIVIKPEMIGHYLAEFSMTCKKVNHHRPRICGCCCFRRSTR 155

Query: 422 FIPLK 436
           FIPL+
Sbjct: 156 FIPLR 160


>At1g33850.1 68414.m04194 40S ribosomal protein S15, putative
           similar to SP|Q08112 40S ribosomal protein S15
           {Arabidopsis thaliana}
          Length = 70

 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 32/58 (55%), Positives = 39/58 (67%)
 Frame = +3

Query: 24  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 197
           KKRIF+KF++RGVDLD LLDM  E L++            G  RKPMAL+KKLR+A K
Sbjct: 12  KKRIFKKFSFRGVDLDALLDMSTEDLVKHFSSRIRRRFSRGFTRKPMALIKKLRKAVK 69


>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
           (RPS19)
          Length = 212

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 23/58 (39%), Positives = 33/58 (56%)
 Frame = +2

Query: 218 ARDREDSLEKHDLVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGR 391
           A +R+    +  ++PE V S V IYNGKT  + +I    +GH  GEF+ T K  KH +
Sbjct: 153 ALNRKIWSRRSTILPEYVDSAVRIYNGKTHVRCKITEGKVGHKFGEFAFTRKVKKHAK 210


>At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1
           significant, 2 weak WD-40 repeats (PF00400); similar to
           transducin beta-like 1 protein.(SP:O60907) [Homo
           sapiens]
          Length = 467

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 320 IKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSR 421
           +KPE+ G Y  E    Y P+K   PG  ++ SSR
Sbjct: 20  MKPELPGFYYDEEKNRYFPIKGPIPGAKSSSSSR 53


>At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase,
           putative / beta-alanine-pyruvate aminotransferase,
           putative / AGT, putative similar to SP|Q64565
           Alanine--glyoxylate aminotransferase 2, mitochondrial
           precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
           aminotransferase) {Rattus norvegicus}; contains Pfam
           profile PF00202: aminotransferase, class III
          Length = 477

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 242 EKHDLVPEMVGSIVGIYNGKTFNQVEIKPEMIG 340
           E H++VP++V    GI NG     V   PE+ G
Sbjct: 308 EAHNVVPDIVTMAKGIGNGFPLGAVVTTPEIAG 340


>At3g13090.1 68416.m01639 ABC transporter, putative similar to
           MRP-like ABC transporter [Arabidopsis thaliana]
           GI:2316016; contains Pfam profile: PF00005 ABC
           transporter
          Length = 1466

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -1

Query: 128 ARTGMH*FHELLIGHI--KELIEINSPVSELPENTLFL 21
           A TG H F E+L+G +  K +I +   V  LPE  L L
Sbjct: 758 AHTGSHLFKEVLLGLLRHKTVIYVTHQVEFLPEADLIL 795


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,378,924
Number of Sequences: 28952
Number of extensions: 193343
Number of successful extensions: 500
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)