Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40314
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    33   0.031
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces...    26   6.3  
SPBC31F10.15c |atp15||F0-ATPase epsilon subunit|Schizosaccharomy...    26   6.3  
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    25   8.3  

>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 33.5 bits (73), Expect = 0.031
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = +2

Query: 2   SNAPARNRRAFEDMPPTRPDTSGRPKLVLEKRTVKEPVNSLASTSQSSS 148
           + A A N R+ ED P   P TS R  + L K+  + PV+S  ST  +SS
Sbjct: 660 ARASALNARSEEDFPALPPSTSKRISVQLGKKQAR-PVDSWGSTPNTSS 707


>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 596 MYKRNLKVFFHVKHYASEYILHKKPVR 516
           +YK  +  F +++ +A EY+  K P R
Sbjct: 165 LYKYTIPSFLNIQEWADEYLTGKNPER 191


>SPBC31F10.15c |atp15||F0-ATPase epsilon subunit|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 67

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 388 VKNDLKPDDLNETIVRLRFTIFFLYALWERGTQRGREEH 272
           V+  LKP+  NE  V+      FLY  W+ G Q   E +
Sbjct: 22  VRQALKPEIKNE--VKTHGDAEFLYTRWKNGAQEKTESY 58


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/41 (21%), Positives = 24/41 (58%)
 Frame = +2

Query: 38  DMPPTRPDTSGRPKLVLEKRTVKEPVNSLASTSQSSSIFGG 160
           D P    D +G+P+ ++++ T+    +++   ++ +SI+ G
Sbjct: 298 DFPELTIDINGKPEPIMKRTTLVANTSNMPVAAREASIYTG 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,922,611
Number of Sequences: 5004
Number of extensions: 58791
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)