Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40314
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0061 - 4812903-4812940,4813140-4813536                           29   2.8  
08_02_1098 - 24291138-24291851,24292607-24292861                       29   2.8  
02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,198...    28   6.6  
11_06_0042 + 19550260-19550278,19550418-19550530,19551841-195520...    28   8.7  
03_02_0861 - 11873026-11874009,11874140-11874180,11876050-11876314     28   8.7  

>10_02_0061 - 4812903-4812940,4813140-4813536
          Length = 144

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 53  RPDTSGRPKLVLEKRTVKEPVNSLASTSQSSSIFG 157
           R   SGR  +VLE+ TV     +LAS+S+ +S+ G
Sbjct: 97  RAAMSGREAVVLERGTVMSCARTLASSSRDNSVGG 131


>08_02_1098 - 24291138-24291851,24292607-24292861
          Length = 322

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 132 VEASELTGSFTVRFSSTSFGLPEVSGL 52
           VEA  LTG   +RF+   FG PE +GL
Sbjct: 46  VEADTLTGLPALRFAIVKFGHPEFAGL 72


>02_01_0297 +
           1986422-1986570,1986960-1987065,1987188-1987464,
           1987805-1988305,1989010-1990016,1990131-1990781,
           1991337-1991633,1991735-1992013,1993070-1993198,
           1993291-1993491,1993651-1993793,1993878-1994190,
           1994349-1994488,1995320-1995398,1995484-1995753,
           1996208-1996425,1996521-1996632
          Length = 1623

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 193 KFFELFFSRPSPAEYRRRLTSRGQRVDGLLYRPLL 89
           + FE    + S  ++RRRL    +R++ +LYR  L
Sbjct: 49  RIFEYIGRKQSSTDWRRRLPELAKRLEEILYRKFL 83


>11_06_0042 +
           19550260-19550278,19550418-19550530,19551841-19552051,
           19552164-19552401,19552662-19552752,19552883-19552917,
           19554179-19554452
          Length = 326

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 475 ISEIVRGAQK-RVSARNKLIHTHNKANGVHVKNDLKPD 365
           I EI RG +     +R K+IH   KAN + + +DL P+
Sbjct: 131 IIEIARGLEYLHEESRLKIIHRDLKANNILLDSDLTPE 168


>03_02_0861 - 11873026-11874009,11874140-11874180,11876050-11876314
          Length = 429

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 50  TRPDTSGRPKLVLEKRTVKEPVNSLASTSQSSSIFGGARP 169
           +RPDTSG P+    + T     +S +  S+SS +   ++P
Sbjct: 90  SRPDTSGYPQSSERQLTAVSSFSSASPFSESSQLASSSKP 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,009,635
Number of Sequences: 37544
Number of extensions: 344308
Number of successful extensions: 775
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)