Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40314
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18016| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   6e-07
SB_50855| Best HMM Match : Ras (HMM E-Value=0)                         32   0.54 
SB_33470| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.72 
SB_33049| Best HMM Match : 3_5_exonuc (HMM E-Value=0)                  29   3.8  
SB_16972| Best HMM Match : Ribosomal_60s (HMM E-Value=0.51)            28   6.7  
SB_11782| Best HMM Match : P53_tetramer (HMM E-Value=3.3e-11)          28   6.7  
SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_18016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 25/42 (59%), Positives = 29/42 (69%)
 Frame = +2

Query: 47  PTRPDTSGRPKLVLEKRTVKEPVNSLASTSQSSSIFGGARPR 172
           PT  + S RPKL L  RTVK+PVN LAS +Q   IFG A+PR
Sbjct: 515 PTPEERSQRPKLKLMPRTVKDPVNDLASETQRMKIFGDAKPR 556


>SB_50855| Best HMM Match : Ras (HMM E-Value=0)
          Length = 733

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 32  FEDMPPTRPDT-SGRPKLVLEKRTVK-EPVNSLASTSQSSSIFGGARP 169
           ++D    R D    RP+L L+ RT   E      + S+SS+IFGGA+P
Sbjct: 550 YDDHGADRRDAPKERPRLQLQPRTKPPEETKEAPAESRSSAIFGGAKP 597


>SB_33470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 71  RPKLVLEKRTVK-EPVNSLASTSQSSSIFGGARP 169
           RP+L L+ RT   E      + S+SS+IFGGA+P
Sbjct: 135 RPRLQLQPRTKPPEETKEAPAESRSSAIFGGAKP 168


>SB_33049| Best HMM Match : 3_5_exonuc (HMM E-Value=0)
          Length = 470

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 401 GFIMCMYELITRAHSFLSATNNLAYFLHRMYLNF**NNVVRAFY 532
           GF+ C+ ++ TR H FL  T  L   LH +  +F   N+++ F+
Sbjct: 9   GFV-CLMQISTRDHDFLVDTLELRNDLHLLNESFTNPNILKVFH 51


>SB_16972| Best HMM Match : Ribosomal_60s (HMM E-Value=0.51)
          Length = 1275

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 135  LVEASELTGSFTVRFSSTSFGLPEVSGLVGGISSNARLFLAG 10
            + +A+ +TG   V  + T + +  ++ LVGG   NA  F+ G
Sbjct: 1114 ITDAAVITGLVAVCKAQTHYSMASIAILVGGAVLNATAFVGG 1155


>SB_11782| Best HMM Match : P53_tetramer (HMM E-Value=3.3e-11)
          Length = 484

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +1

Query: 214 PMYYYQKTTYFCLTLCEYTRALLALSVCPVPKVRTKKKL*IVIELWFRLSRQV 372
           P+Y+   T  +   L           VCP  ++RT+ K+  V EL+ R+S  V
Sbjct: 76  PVYFRSTTVVYVNELARSDVRRRISIVCPCREIRTQHKVKYVTELFSRVSDSV 128


>SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2060

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 2    SNAPARNRRAFEDM-PPTRPDTSGRPKLVLEKRTVKEPVNSLASTSQSSSI 151
            ++ P+    +  D+ PP  P  SG+  + L KR V+EP+++   + Q+  +
Sbjct: 1691 NHIPSATELSVTDIKPPLTPSFSGKMDVQLFKRAVQEPLSTPFISKQTDDL 1741


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,218,742
Number of Sequences: 59808
Number of extensions: 410202
Number of successful extensions: 987
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)