Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40314
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067208-1|AAC16975.1|  298|Caenorhabditis elegans Hypothetical ...    31   0.63 
Z78418-4|CAB01698.1|  710|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U64601-4|AAB04574.1|  163|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z81556-4|CAB04526.1|  223|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical...    28   7.8  
AC006743-4|AAF60502.1|  291|Caenorhabditis elegans Collagen prot...    28   7.8  

>AF067208-1|AAC16975.1|  298|Caenorhabditis elegans Hypothetical
           protein C46F2.1 protein.
          Length = 298

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -1

Query: 566 HVKHYASEYILHKKPVRRYFTRNLNTYGVENKRDCSWRS 450
           H KH+++   +H +  +  F ++LN   + +K+DC+W S
Sbjct: 247 HHKHHSNHSTMHHESQKLTF-KSLNLLSLPHKKDCTWTS 284


>Z78418-4|CAB01698.1|  710|Caenorhabditis elegans Hypothetical
           protein F25D7.5 protein.
          Length = 710

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/74 (27%), Positives = 31/74 (41%)
 Frame = +1

Query: 475 FSTPYVFKFLVK*RRTGFLCKIYSLA*CFT*KKTFRFLLYINVFCGHNVYYYFSL*SFVT 654
           F+ PY+FK      R  + CK +S    F  K    F  + NV    N  ++F   S   
Sbjct: 259 FNDPYMFKISQATCRINYFCKFFSCD--FRKKSKISFFFFGNVSILKNFQFFFRC-STKP 315

Query: 655 NTMLELVHHLIIWL 696
           N   + +  +I W+
Sbjct: 316 NKKPQKIPAMIQWM 329


>U64601-4|AAB04574.1|  163|Caenorhabditis elegans Hypothetical
           protein M03F4.4 protein.
          Length = 163

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 138 SLRRYSAGLGREKKSSKNLRETNESPDVLLPKNY 239
           S +RY +G+ + KK     R+ ++SP  L+PK +
Sbjct: 20  SRKRYISGIEKHKKKRVTKRKGSDSPVDLIPKRF 53


>Z81556-4|CAB04526.1|  223|Caenorhabditis elegans Hypothetical
           protein F58G1.4 protein.
          Length = 223

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 256 LCEYTRALLALSVCPVPKVRT 318
           LC+YT   LA SVC V K++T
Sbjct: 120 LCKYTLCSLAPSVCSVLKIKT 140


>AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical
           protein F40G9.1 protein.
          Length = 636

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -1

Query: 593 YKRNLKVFFHVKHYASEYILHKK--PVRRYFTRNL 495
           +K+ +K FF +++   + ILH K   +  YFT+N+
Sbjct: 317 FKKIVKTFFFIQNLRKKMILHIKMCKILHYFTKNV 351


>AC006743-4|AAF60502.1|  291|Caenorhabditis elegans Collagen protein
           109 protein.
          Length = 291

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 11  PARNRRAFEDMPPTRPDTSGRPKLVLEKRTV 103
           P RN +      P RP T GRP +V E++ V
Sbjct: 104 PGRNGKPGVPGAPGRPGTPGRPPIVCEEQDV 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,052,757
Number of Sequences: 27780
Number of extensions: 329306
Number of successful extensions: 904
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)